Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 158 1e-33 SEQ17778 125 6e-24 seq4983 102 6e-17 >SEQ10860 Length=7223 Score = 158 bits (174), Expect = 1e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| |||||||| ||||||||||||| | ||| | |||| ||||||||||| || Sbjct 1484 GTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCG 1543 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| |||||||| || ||||| || ||| Sbjct 1544 GCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 1603 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || || |||| ||| || |||||||||| || || || || | ||| Sbjct 1604 ACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1663 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || || ||||| || Sbjct 1664 TTAACGAAGATTTGCATCGT 1683 >SEQ17778 Length=11298 Score = 125 bits (138), Expect = 6e-24 Identities = 177/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 |||||||||||||| || | | | ||||| | || || || || | || | |||||| Sbjct 4244 AATTTTCGTTTACATCCCTGATAGTTCATATAGCGAATCTTGCCGAATATAGCACGCTCC 4185 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 |||| || ||| || | || | | ||||||||||| || |||||||||||||| Sbjct 4184 TTCCATGCGTTATCATGGATACCCCCGACAGACCACATGCAGCCCACATAACCGTTGGGA 4125 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTG-- 13832 ||||| ||||||| ||||||||||||||| | ||||| | | | ||| ||| Sbjct 4124 TCGCGGCCATCCAGACTGTATTTGTCGTTCAGCAATATG--CTATACTCCAGCGCCTGCT 4067 Query 13833 TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCA 13892 || | | |||||| | ||| || || |||||||| ||||||| | |||| |||| Sbjct 4066 CTGGTGTTTCTGTCCATTCAAGTATCTTCTTGGCCCAATACATTCTCAGAAATCCATGCA 4007 Query 13893 TTTTGCC 13899 ||||||| Sbjct 4006 TTTTGCC 4000 >seq4983 Length=3163 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| || || | |||| ||| Sbjct 662 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCC 721 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||| ||||| || ||||| || || || || || Sbjct 722 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 781 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || ||||| | || || || | || | || ||| Sbjct 782 ATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTAATGGTCTTG 841 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| |||||||| Sbjct 842 CCAGTCAATGTCTTTACAAAGATCTGCAT 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396055729309485