Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value SEQ21083 508 1e-139 SEQ43844 183 7e-42 SEQ32968 154 4e-33 SEQ22413 132 1e-26 SEQ43871 80.6 6e-11 >SEQ21083 Length=3994 Score = 508 bits (562), Expect = 1e-139 Identities = 721/1021 (71%), Gaps = 74/1021 (7%) Strand=Plus/Minus Query 6027 AAGGAGCACACCCCATGCCCGTGACCCTCGCCGAGGCGTCCAAC--AACGCGCAGGACGA 6084 ||||| || ||||||| || | ||||| || || || | | | ||| | ||||| || Sbjct 2845 AAGGACCAT-CCCCATGGCCATCACCCTGGCTGACGC--CAAGCTAAACACCCAGGAGGA 2789 Query 6085 CGTCGACGTCTCCGTGATCGACGAGTTCCGCAAGGAGTCGGCCGTTCTCGACTCGCTCGT 6144 | |||| |||| |||||||||||||| ||| || || | |||||| || | | Sbjct 2788 CTACGACCCGGCCGTCATCGACGAGTTCCGGAAGTCCTCCGCTCTCCTCGACGCGATGAT 2729 Query 6145 CTTCGCCGACGTCGTCAACCCGGCCGACGGCGGCGACACCATGACCTACGGCTACCGCCG 6204 ||||| | || |||||||| ||| | ||||||| || ||||||||||||||||||| Sbjct 2728 CTTCGACACCGCGGTCAACCCCGCCCAGGGCGGCGCGACGCTGACCTACGGCTACCGCCG 2669 Query 6205 GCTCATCACGCAG-CCGACCGCCAGCTTCCGCGCGATCAACTCCGAGTACGCGGCTTCCG 6263 || |||| ||| ||||| || |||||||||||||||||||||||||||| ||| Sbjct 2668 CCTGGTCACCCAGGCCGAC-GCTGCATTCCGCGCGATCAACTCCGAGTACGCGGACTCCA 2610 Query 6264 AGGTCCAGACCCAGCGCTACACCGTCGACCTCGCCGTGCTCGGCGGCAGCTTCCGCGTGG 6323 | ||| ||| |||| | ||||||||||||| || ||||| ||| ||| | | Sbjct 2609 ACGTCACCACCGCCCGCTTCTCCGTCGACCTCGCGGTCCTCGGTGGCGCGTTCAAGATCG 2550 Query 6324 ACCGCGTCGTCTCCGGTATCGGCCCGGCCGCGTCCGGCGCCGTCGCGCTGAACATGCAGC 6383 |||||||| || || |||||||||| || ||| || ||| | ||| | ||| | Sbjct 2549 ACCGCGTCCTCGCCAACCTCGGCCCGGCAGCCTCCAACGAGGTCACCCTGCAGATGGGCC 2490 Query 6384 AGAAGATCAAGGCGACCCGGACCGAGTTCCAGGACGCCGTGATCAACGGCGACACCGCGG 6443 ||||||||||||| | |||| |||| ||||||||||||||||||| | |||| | Sbjct 2489 AGAAGATCAAGGCCGCGAACACCGCGTTCGCTGACGCCGTGATCAACGGCGTCGCCGCCG 2430 Query 6444 TCGACGCGAACGCGTTCGACGGCCTCGACAAGGCCCTTACCGGAAGCTCGACCGAGTTCC 6503 || || ||||| ||||| || Sbjct 2429 TCNN-----------TC--------CGACA---------------------CCGAGATCG 2410 Query 6504 GCGCGGGATCCGTCACCG---ACTGGTCGGACTTCGACACCGCGGCCCGAGCCGAGCACA 6560 |||| | || ||||| ||||||| ||||||||||||| |||| |||||||||| Sbjct 2409 GCGCCGA---CGACACCGTCGACTGGTCCGACTTCGACACCGACACCCGGGCCGAGCACA 2353 Query 6561 AGGCCCTCGACGCCATCGACGAGTGGCTGTCCCTCATGGACGGCGCCCCGACGATCATCC 6620 |||||||||||| ||||||||||| || | | | |||||| ||||||| |||||| Sbjct 2352 AGGCCCTCGACGTCATCGACGAGTTCCTCGGCAACCTCGACGGCACCCCGACCGTCATCC 2293 Query 6621 TCGGCAACAAGCTCGCACTcgcgcgcgtccgcgccgccgcccgccgcgccgGCATGTACG 6680 ||||||||||| | | ||||| |||||||||||||||||||||||||||||| |||| Sbjct 2292 TCGGCAACAAGGCCACCCTCGCCCGCGTCCGCGCCGCCGCCCGCCGCGCCGGCCAGTACA 2233 Query 6681 TCAAGAACCCCGTCGAGGGGCTCATCGGCCCGAACGGCCGCCCGATCGTCCGCGAGCAGT 6740 |||| |||| ||||||| ||| ||||| | |||||| ||||||| |||||| | Sbjct 2232 CCAAGGACCCGGTCGAGGACCTCGTCGGCGCCGGCGGCCGGCCGATCGAGCGCGAGTCCT 2173 Query 6741 ACGGCGACATCACGTTCGCCGACCCGGGCGACAAGGCCGGCTCGAACACGGCGATCATCC 6800 |||||| |||| |||| |||||||||| ||||||||||| | ||| ||||||||| Sbjct 2172 ACGGCGGAGTCACCTTCGTCGACCCGGGCAACAAGGCCGGCACCAACGACCCGATCATCC 2113 Query 6801 CCGTCGAGGACCGCACGGTGGGCGGCAACGCCGCGACCGGCCTGACGGACCTCTACGCCT 6860 | ||| |||| | || ||| ||| ||||||||| Sbjct 2112 CGATCG---------------------ACGCAGAGAAGGGCACCACGTCCCTCTACGCGG 2074 Query 6861 ACCGCGTCGGTCTCGACGGCTTCCACGGTGTCTCGTGCATCGGGGGTCAGGTGGTCCGCC 6920 |||| |||| ||||||||||||||||| ||| || || | ||| || | || | | Sbjct 2073 TCCGCATCGGCCTCGACGGCTTCCACGGAGTCACGACCACCACCGGTGAGCTCGTGCACT 2014 Query 6921 AGTGGCTCCCCGACTTCAACTCGGCGGGCGCCGTCAAGACGGGCGAGGTCGAGCTCGGGC 6980 ||||| || ||||||| | | ||||| |||||| ||||||||||||||||| | Sbjct 2013 CCTGGCTGCCGGACTTCACTACCTCCGGCGCGGTCAAGCGCGGCGAGGTCGAGCTCGGCC 1954 Query 6981 CGATCGGCGTCGTGCTCAAGGCGACCAAGGCCGCGACCGTCTTCCGCAACATCAAGGTCC 7040 || ||| ||||| ||||||||||| ||||| || |||| | |||||| ||||||| | Sbjct 1953 CGGTCGCCGTCGCCCTCAAGGCGACGAAGGCGGCCGCCGTGCTGCGCAACGTCAAGGTTC 1894 Query 7041 G 7041 | Sbjct 1893 G 1893 >SEQ43844 Length=619 Score = 183 bits (202), Expect = 7e-42 Identities = 269/373 (72%), Gaps = 11/373 (3%) Strand=Plus/Plus Query 30178 GACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACCCCC 30237 |||||||| |||||| | || |||||| |||| |||||||||||||| | | |||||| Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60 Query 30238 GCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCGAC-CGCAC 30296 ||||||||||||| ||| ||| |||| || ||||||||||||||| || ||| Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCA- 119 Query 30297 CGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGCCAGCA 30356 ||||| | ||| || | ||| | |||||||| || || | | ||||||||| Sbjct 120 GACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGC 179 Query 30357 GGCCGAGAACGTCGCCGGATC--CATCCACCGCGGCGACCGCGTGATCGTCGTCGGCACC 30414 || |||||||| || || | | | ||| || ||||| |||||||||||||||| Sbjct 180 AGCGGAGAACGTGGC--GAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAAT 237 Query 30415 CTCGCCCAGCGCACGTACGA---GAAGGACGGCGA-GCGCCGAGCGTCCTACGAGGTCAA 30470 ||| |||||| | ||||| |||| |||||| ||| | ||| |||||| || | Sbjct 238 CTCCGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGT-GTACGAGATCGA 296 Query 30471 GGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCACCGC 30530 ||| || || |||||||| | ||| | |||| ||||| |||||||| || || Sbjct 297 GGCGGACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGCGCAGATCACCAAGACCCCCCG 356 Query 30531 CCAGGGCGCCCAG 30543 ||||||| |||| Sbjct 357 TCAGGGCGGCCAG 369 >SEQ32968 Length=2597 Score = 154 bits (170), Expect = 4e-33 Identities = 261/375 (70%), Gaps = 5/375 (1%) Strand=Plus/Minus Query 30175 GGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACC 30234 ||||| |||| |||||| || || |||||| ||||||| ||| || || |||| ||| Sbjct 2191 GGAGATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACG 2132 Query 30235 CCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCGACCGC 30294 ||| ||||| || |||||||||||||| |||| || || ||||| ||||||| Sbjct 2131 CCCAGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCG 2072 Query 30295 ACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGCCAG 30354 | | ||| | ||| ||||| ||| | |||||||| | | ||| ||||||||| Sbjct 2071 AAGTCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAG 2012 Query 30355 CAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTCGGCACC 30414 |||||||||||||| ||| | ||| || ||||||||||||||| |||| Sbjct 2011 GCCGCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGG 1952 Query 30415 CTCGCCCAGCGCACGTACGAGA---AGGACGGCGAG-CGCCGAGCGTCCTACGAGGTCAA 30470 || |||||| | ||||| | || || ||| || | ||| | |||||| | Sbjct 1951 CTGCGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGT-GTTCGAGGTGGA 1893 Query 30471 GGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCACCGC 30530 || ||| || |||||||| | ||| | |||| ||||| ||| ||||| || || Sbjct 1892 GGTCGACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAGACCCCCCG 1833 Query 30531 CCAGGGCGCCCAGGG 30545 |||||| | ||||| Sbjct 1832 CCAGGGTGGTCAGGG 1818 >SEQ22413 Length=7522 Score = 132 bits (146), Expect = 1e-26 Identities = 261/372 (70%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 30175 GGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACC 30234 ||| | ||||| |||||| | || |||||| |||| || |||||||| | | | |||| Sbjct 3693 GGACAGACCCCCATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACC 3634 Query 30235 CCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACG-TTCGACCG 30293 ||| ||| ||||| ||| | ||||||||| | || || || || || ||| |||||| Sbjct 3633 CCCAGCGGTGCCGCGGTCACCAACTTCCGGGTGGCTTCCACACCGCG-ACGCTTCGACT- 3576 Query 30294 CACCG-CCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGC- 30351 ||| | ||||| | ||| |||| |||| || |||||||| || | | | |||||| Sbjct 3575 CACAGACCAACCAGTGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCA 3516 Query 30352 CAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTCGGC 30411 | || | |||||||||||||| | | ||| |||||||| ||||||||| |||| Sbjct 3515 CCGCCG-CCGAGAACGTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGC 3457 Query 30412 ACCCTCGC-CCAGCGCACGTACGAGA---AGGACGGCGAG-CGCCGAGCGTCCTACGAGG 30466 | | || || || | ||||||| || || ||| || | ||| | ||||| Sbjct 3456 -CGGTTGCGTCAACGGTCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGT-GTTCGAGG 3399 Query 30467 TCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCA 30526 | || |||| || ||||||||| |||| |||| |||||| ||| ||||| || Sbjct 3398 TGGAGACCGACGAGGTCGGCCCCTCGCTGCGCTACGCCACCGCCCAGGTCGCCAAGACCC 3339 Query 30527 CCGCCCAGGGCG 30538 || ||||||| Sbjct 3338 CCCGACAGGGCG 3327 >SEQ43871 Length=584 Score = 80.6 bits (88), Expect = 6e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 417 GCAGCTACTCGCCCGCCTGTCCGTGCCCGGGGCGCGCCTCTACGCCACGACGAACCCGGA 476 ||| || || || |||||||| || ||||| || | ||| |||||| || ||||| || Sbjct 311 GCAACTTCTAGCACGCCTGTCAGTACCCGGCGCACAGTTCTTCGCCACCACCAACCCCGA 252 Query 477 CAGCCCCCGGCACTGGCTACGGACGCAGTACCTCGACCGGGTCGACGAG 525 |||||| ||||||||| || | | |||||||||||| | |||||| Sbjct 251 CAGCCCGTCGCACTGGCTGAAGAAGGACTACCTCGACCGGCTGGACGAG 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120170970727740