Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_018848.1
Length=37612
Score E
Sequences producing significant alignments: (Bits) Value
SEQ21083 508 1e-139
SEQ43844 183 7e-42
SEQ32968 154 4e-33
SEQ22413 132 1e-26
SEQ43871 80.6 6e-11
>SEQ21083
Length=3994
Score = 508 bits (562), Expect = 1e-139
Identities = 721/1021 (71%), Gaps = 74/1021 (7%)
Strand=Plus/Minus
Query 6027 AAGGAGCACACCCCATGCCCGTGACCCTCGCCGAGGCGTCCAAC--AACGCGCAGGACGA 6084
||||| || ||||||| || | ||||| || || || | | | ||| | ||||| ||
Sbjct 2845 AAGGACCAT-CCCCATGGCCATCACCCTGGCTGACGC--CAAGCTAAACACCCAGGAGGA 2789
Query 6085 CGTCGACGTCTCCGTGATCGACGAGTTCCGCAAGGAGTCGGCCGTTCTCGACTCGCTCGT 6144
| |||| |||| |||||||||||||| ||| || || | |||||| || | |
Sbjct 2788 CTACGACCCGGCCGTCATCGACGAGTTCCGGAAGTCCTCCGCTCTCCTCGACGCGATGAT 2729
Query 6145 CTTCGCCGACGTCGTCAACCCGGCCGACGGCGGCGACACCATGACCTACGGCTACCGCCG 6204
||||| | || |||||||| ||| | ||||||| || |||||||||||||||||||
Sbjct 2728 CTTCGACACCGCGGTCAACCCCGCCCAGGGCGGCGCGACGCTGACCTACGGCTACCGCCG 2669
Query 6205 GCTCATCACGCAG-CCGACCGCCAGCTTCCGCGCGATCAACTCCGAGTACGCGGCTTCCG 6263
|| |||| ||| ||||| || |||||||||||||||||||||||||||| |||
Sbjct 2668 CCTGGTCACCCAGGCCGAC-GCTGCATTCCGCGCGATCAACTCCGAGTACGCGGACTCCA 2610
Query 6264 AGGTCCAGACCCAGCGCTACACCGTCGACCTCGCCGTGCTCGGCGGCAGCTTCCGCGTGG 6323
| ||| ||| |||| | ||||||||||||| || ||||| ||| ||| | |
Sbjct 2609 ACGTCACCACCGCCCGCTTCTCCGTCGACCTCGCGGTCCTCGGTGGCGCGTTCAAGATCG 2550
Query 6324 ACCGCGTCGTCTCCGGTATCGGCCCGGCCGCGTCCGGCGCCGTCGCGCTGAACATGCAGC 6383
|||||||| || || |||||||||| || ||| || ||| | ||| | ||| |
Sbjct 2549 ACCGCGTCCTCGCCAACCTCGGCCCGGCAGCCTCCAACGAGGTCACCCTGCAGATGGGCC 2490
Query 6384 AGAAGATCAAGGCGACCCGGACCGAGTTCCAGGACGCCGTGATCAACGGCGACACCGCGG 6443
||||||||||||| | |||| |||| ||||||||||||||||||| | |||| |
Sbjct 2489 AGAAGATCAAGGCCGCGAACACCGCGTTCGCTGACGCCGTGATCAACGGCGTCGCCGCCG 2430
Query 6444 TCGACGCGAACGCGTTCGACGGCCTCGACAAGGCCCTTACCGGAAGCTCGACCGAGTTCC 6503
|| || ||||| ||||| ||
Sbjct 2429 TCNN-----------TC--------CGACA---------------------CCGAGATCG 2410
Query 6504 GCGCGGGATCCGTCACCG---ACTGGTCGGACTTCGACACCGCGGCCCGAGCCGAGCACA 6560
|||| | || ||||| ||||||| ||||||||||||| |||| ||||||||||
Sbjct 2409 GCGCCGA---CGACACCGTCGACTGGTCCGACTTCGACACCGACACCCGGGCCGAGCACA 2353
Query 6561 AGGCCCTCGACGCCATCGACGAGTGGCTGTCCCTCATGGACGGCGCCCCGACGATCATCC 6620
|||||||||||| ||||||||||| || | | | |||||| ||||||| ||||||
Sbjct 2352 AGGCCCTCGACGTCATCGACGAGTTCCTCGGCAACCTCGACGGCACCCCGACCGTCATCC 2293
Query 6621 TCGGCAACAAGCTCGCACTcgcgcgcgtccgcgccgccgcccgccgcgccgGCATGTACG 6680
||||||||||| | | ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2292 TCGGCAACAAGGCCACCCTCGCCCGCGTCCGCGCCGCCGCCCGCCGCGCCGGCCAGTACA 2233
Query 6681 TCAAGAACCCCGTCGAGGGGCTCATCGGCCCGAACGGCCGCCCGATCGTCCGCGAGCAGT 6740
|||| |||| ||||||| ||| ||||| | |||||| ||||||| |||||| |
Sbjct 2232 CCAAGGACCCGGTCGAGGACCTCGTCGGCGCCGGCGGCCGGCCGATCGAGCGCGAGTCCT 2173
Query 6741 ACGGCGACATCACGTTCGCCGACCCGGGCGACAAGGCCGGCTCGAACACGGCGATCATCC 6800
|||||| |||| |||| |||||||||| ||||||||||| | ||| |||||||||
Sbjct 2172 ACGGCGGAGTCACCTTCGTCGACCCGGGCAACAAGGCCGGCACCAACGACCCGATCATCC 2113
Query 6801 CCGTCGAGGACCGCACGGTGGGCGGCAACGCCGCGACCGGCCTGACGGACCTCTACGCCT 6860
| ||| |||| | || ||| ||| |||||||||
Sbjct 2112 CGATCG---------------------ACGCAGAGAAGGGCACCACGTCCCTCTACGCGG 2074
Query 6861 ACCGCGTCGGTCTCGACGGCTTCCACGGTGTCTCGTGCATCGGGGGTCAGGTGGTCCGCC 6920
|||| |||| ||||||||||||||||| ||| || || | ||| || | || | |
Sbjct 2073 TCCGCATCGGCCTCGACGGCTTCCACGGAGTCACGACCACCACCGGTGAGCTCGTGCACT 2014
Query 6921 AGTGGCTCCCCGACTTCAACTCGGCGGGCGCCGTCAAGACGGGCGAGGTCGAGCTCGGGC 6980
||||| || ||||||| | | ||||| |||||| ||||||||||||||||| |
Sbjct 2013 CCTGGCTGCCGGACTTCACTACCTCCGGCGCGGTCAAGCGCGGCGAGGTCGAGCTCGGCC 1954
Query 6981 CGATCGGCGTCGTGCTCAAGGCGACCAAGGCCGCGACCGTCTTCCGCAACATCAAGGTCC 7040
|| ||| ||||| ||||||||||| ||||| || |||| | |||||| ||||||| |
Sbjct 1953 CGGTCGCCGTCGCCCTCAAGGCGACGAAGGCGGCCGCCGTGCTGCGCAACGTCAAGGTTC 1894
Query 7041 G 7041
|
Sbjct 1893 G 1893
>SEQ43844
Length=619
Score = 183 bits (202), Expect = 7e-42
Identities = 269/373 (72%), Gaps = 11/373 (3%)
Strand=Plus/Plus
Query 30178 GACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACCCCC 30237
|||||||| |||||| | || |||||| |||| |||||||||||||| | | ||||||
Sbjct 1 GACACCCCCATCACCATCGTCGGCAACCTCGTAGCCGACCCCGAACTGCGCTACACCCCG 60
Query 30238 GCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCGAC-CGCAC 30296
||||||||||||| ||| ||| |||| || ||||||||||||||| || |||
Sbjct 61 TCCGGCGCCGCCGTGTGCAACGGCCGTGTCGCATCCACCCCCCGCACGTTCAACAAGCA- 119
Query 30297 CGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGCCAGCA 30356
||||| | ||| || | ||| | |||||||| || || | | |||||||||
Sbjct 120 GACCAACCAGTGGGAGGATGCCGAAGCACTGTTCCTCACCTTCAACCTGTGGCGCCAGGC 179
Query 30357 GGCCGAGAACGTCGCCGGATC--CATCCACCGCGGCGACCGCGTGATCGTCGTCGGCACC 30414
|| |||||||| || || | | | ||| || ||||| ||||||||||||||||
Sbjct 180 AGCGGAGAACGTGGC--GAACAGCCTGCACAAGGGTGACCGGGTGATCGTCGTCGGCAAT 237
Query 30415 CTCGCCCAGCGCACGTACGA---GAAGGACGGCGA-GCGCCGAGCGTCCTACGAGGTCAA 30470
||| |||||| | ||||| |||| |||||| ||| | ||| |||||| || |
Sbjct 238 CTCCGCCAGCGGTCCTACGAGTCGAAGACCGGCGACACGCGCACCGT-GTACGAGATCGA 296
Query 30471 GGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCACCGC 30530
||| || || |||||||| | ||| | |||| ||||| |||||||| || ||
Sbjct 297 GGCGGACGAGGTCGGCCCTTCCCTCCGGTACGCCACCGCGCAGATCACCAAGACCCCCCG 356
Query 30531 CCAGGGCGCCCAG 30543
||||||| ||||
Sbjct 357 TCAGGGCGGCCAG 369
>SEQ32968
Length=2597
Score = 154 bits (170), Expect = 4e-33
Identities = 261/375 (70%), Gaps = 5/375 (1%)
Strand=Plus/Minus
Query 30175 GGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACC 30234
||||| |||| |||||| || || |||||| ||||||| ||| || || |||| |||
Sbjct 2191 GGAGATACCCAGATCACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACG 2132
Query 30235 CCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCGACCGC 30294
||| ||||| || |||||||||||||| |||| || || ||||| |||||||
Sbjct 2131 CCCAGTGGCGCGGCGGTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCG 2072
Query 30295 ACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGCCAG 30354
| | ||| | ||| ||||| ||| | |||||||| | | ||| |||||||||
Sbjct 2071 AAGTCGAACCAGTGGGTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAG 2012
Query 30355 CAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTCGGCACC 30414
|||||||||||||| ||| | ||| || ||||||||||||||| ||||
Sbjct 2011 GCCGCCGAGAACGTCGCGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGG 1952
Query 30415 CTCGCCCAGCGCACGTACGAGA---AGGACGGCGAG-CGCCGAGCGTCCTACGAGGTCAA 30470
|| |||||| | ||||| | || || ||| || | ||| | |||||| |
Sbjct 1951 CTGCGCCAGCGGTCCTACGAAACCCGTGAGGGTGAGAAGCGCACCGT-GTTCGAGGTGGA 1893
Query 30471 GGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCACCGC 30530
|| ||| || |||||||| | ||| | |||| ||||| ||| ||||| || ||
Sbjct 1892 GGTCGACGAGGTCGGCCCGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAGACCCCCCG 1833
Query 30531 CCAGGGCGCCCAGGG 30545
|||||| | |||||
Sbjct 1832 CCAGGGTGGTCAGGG 1818
>SEQ22413
Length=7522
Score = 132 bits (146), Expect = 1e-26
Identities = 261/372 (70%), Gaps = 13/372 (3%)
Strand=Plus/Minus
Query 30175 GGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGTTCACC 30234
||| | ||||| |||||| | || |||||| |||| || |||||||| | | | ||||
Sbjct 3693 GGACAGACCCCCATCACCATCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACC 3634
Query 30235 CCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACG-TTCGACCG 30293
||| ||| ||||| ||| | ||||||||| | || || || || || ||| ||||||
Sbjct 3633 CCCAGCGGTGCCGCGGTCACCAACTTCCGGGTGGCTTCCACACCGCG-ACGCTTCGACT- 3576
Query 30294 CACCG-CCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCGTATGGCGC- 30351
||| | ||||| | ||| |||| |||| || |||||||| || | | | ||||||
Sbjct 3575 CACAGACCAACCAGTGGGTCGACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCA 3516
Query 30352 CAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGTCGGC 30411
| || | |||||||||||||| | | ||| |||||||| ||||||||| ||||
Sbjct 3515 CCGCCG-CCGAGAACGTCGCCAACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGC 3457
Query 30412 ACCCTCGC-CCAGCGCACGTACGAGA---AGGACGGCGAG-CGCCGAGCGTCCTACGAGG 30466
| | || || || | ||||||| || || ||| || | ||| | |||||
Sbjct 3456 -CGGTTGCGTCAACGGTCCTACGAGACCCGCGAGGGTGAGAAGCGCACCGT-GTTCGAGG 3399
Query 30467 TCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAAGGCCA 30526
| || |||| || ||||||||| |||| |||| |||||| ||| ||||| ||
Sbjct 3398 TGGAGACCGACGAGGTCGGCCCCTCGCTGCGCTACGCCACCGCCCAGGTCGCCAAGACCC 3339
Query 30527 CCGCCCAGGGCG 30538
|| |||||||
Sbjct 3338 CCCGACAGGGCG 3327
>SEQ43871
Length=584
Score = 80.6 bits (88), Expect = 6e-11
Identities = 83/109 (76%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 417 GCAGCTACTCGCCCGCCTGTCCGTGCCCGGGGCGCGCCTCTACGCCACGACGAACCCGGA 476
||| || || || |||||||| || ||||| || | ||| |||||| || ||||| ||
Sbjct 311 GCAACTTCTAGCACGCCTGTCAGTACCCGGCGCACAGTTCTTCGCCACCACCAACCCCGA 252
Query 477 CAGCCCCCGGCACTGGCTACGGACGCAGTACCTCGACCGGGTCGACGAG 525
|||||| ||||||||| || | | |||||||||||| | ||||||
Sbjct 251 CAGCCCGTCGCACTGGCTGAAGAAGGACTACCTCGACCGGCTGGACGAG 203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120170970727740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |