Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value SEQ11799 134 1e-26 SEQ10860 105 5e-18 seq4983 105 5e-18 >SEQ11799 Length=6542 Score = 134 bits (148), Expect = 1e-26 Identities = 270/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 9000 ACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTA 9058 ||| ||||| ||||| || ||||| ||||| ||||| || | || |||| Sbjct 4425 ACCAGTTGAGCCAAAGCCACCCTCGCCGCGCACTGTGTCC-TCCAGTTTGTCGACCTGCT 4367 Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118 |||| |||||| ||||| |||| ||||| ||||| ||||| | || || |||| Sbjct 4366 CCAGCTCGGGATAGAAGATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTTCA 4307 Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178 | | || || | ||||| ||||||||||| || || || | || || | || |||| Sbjct 4306 CCTCGAAATCGGCATCGGAGTGATTGAACAGTACAACACCTAGATTGCCGCGATAGTCCT 4247 Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238 |||| | || || || |||||||||||||||| ||| || || | |||||||| |||| Sbjct 4246 CATCTACAACGCCGGCTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGTGGCG 4187 Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCT 9298 | | || || || | ||| | || | ||| ||| ||| || ||| |||| | ||| Sbjct 4186 CCACACGGCCATAAGAGCCCTCTGGCACTTGGACCTGCAGATCAGTCTTGACAATAGCCT 4127 Query 9299 TGCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGT 9358 ||||| | || | ||| ||||||| | || ||||| | ||||| || | | Sbjct 4126 TGCCGCGAGCCGGCACCACCAAGTCGTAGGCACTGCGTAGATCGAGTCCAGCAGCACGCT 4067 Query 9359 CCGATCCCTTCGT--GGGCGCAAAAGCGTTTTCGGT 9392 |||| || ||| ||| ||| |||| |||||| Sbjct 4066 CCGAGCC--ACGTACGGGTTCAAGTGCGTGTTCGGT 4033 >SEQ10860 Length=7223 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | || ||||||||| ||||||||||| || ||| | || Sbjct 1463 AGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGC 1522 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| |||| ||||||||||| | |||| || || Sbjct 1523 CCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 1582 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || |||| || ||||| | || Sbjct 1583 TTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTG 1642 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||| | ||||| || || || |||||||| Sbjct 1643 ATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCATCGT 1683 >seq4983 Length=3163 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || || | ||| Sbjct 653 AGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGA 712 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| ||||| ||||| | ||||| |||||| Sbjct 713 CCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 772 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| ||| Sbjct 773 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTA 832 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || |||||||| |||||||| Sbjct 833 ATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380723549376915