Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2872 208 1e-48 seq5425 87.8 3e-12 >seq2872 Length=9359 Score = 208 bits (230), Expect = 1e-48 Identities = 549/829 (66%), Gaps = 23/829 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || |||||| | ||||| |||||||| || || || ||||| ||||| |||| Sbjct 2989 CTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTC 3048 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || || |||||| || | | || || | || ||| || Sbjct 3049 CATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCAACCAATAG 3108 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||| ||||| ||||||| |||| ||||| || | ||||||||| || | | Sbjct 3109 GCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTT 3168 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| || ||| || ||| | || | Sbjct 3169 GACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTC 3228 Query 48079 CTTAACGCGG----GACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG--CATAGAGCATGC 48131 | | ||| |||| ||| | ||| | | || |||| |||| |||| Sbjct 3229 AATGATGCGTTCCCGACT---AGGCC--GCTGCACCAAATG-TTGGAACATA-AGCACC- 3280 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||| | |||| ||||| || || ||| | |||||||||| || | Sbjct 3281 --GCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTC 3338 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||| | || | || || |||||||| || | || || ||| |||||||| Sbjct 3339 CAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGA 3398 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 |||| || || || || || || | | | || || || || ||| |||| Sbjct 3399 TGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGA 3458 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| ||||| ||||||||||||||| ||| | |||||||| || ||||| || Sbjct 3459 TCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGA 3518 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 |||| | | | || | | ||| | |||||| | |||||| | ||||| Sbjct 3519 AGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACT---GTACA 3575 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || || ||||||||||| || || |||||||| || || ||| | ||||| || Sbjct 3576 TTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCA 3635 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||||||| | || | || | |||||| || || || || ||||| ||||||| Sbjct 3636 CCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAG 3695 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 |||||||||| | ||||| | |||||| ||||| || | || || ||| Sbjct 3696 CAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAAT 3755 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | ||| ||| ||| ||||||||||| || |||||||| || || Sbjct 3756 CAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGC 3804 >seq5425 Length=12965 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||||| || || ||||||||| | |||||| ||||| |||||| |||||| Sbjct 9997 CTTGAGCATTTTGACGCGATCCTCCAGCTTGGAGATGCGCTCCAGCTTGCGCTTGCGGCA 9938 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 ||||| ||| |||| || ||||| | | ||| |||||| ||| || |||||||| Sbjct 9937 TTTGGAGGCAGCCACACGATTCCGTTGACGCTTGCGTTCCAGCTTAATCTTCTCCTGGTC 9878 Query 241609 CTCCATGTCGATCGGA 241624 |||||||||| ||| Sbjct 9877 GGCCATGTCGATGGGA 9862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930995946003200