Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value SEQ43492 206 7e-49 >SEQ43492 Length=1174 Score = 206 bits (228), Expect = 7e-49 Identities = 292/406 (72%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 12237 GGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12296 |||||| || || | || ||| ||||||||| ||| |||| | | | | || | | | Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850 Query 12297 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAAACGCATGG 12356 ||||| || || |||||||||||||||| | ||||||||||||||||| ||| || Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790 Query 12357 TATCGAGCTCCACGATTACCGGGTGGATTATCCCTGGTGGGAAAACGCCTATCCGGACAA 12416 || | |||||| |||||||| || |||||||| |||||||| | | || || Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736 Query 12417 TTTTTATCAGGATTGCTGGTATGAATGCGGATTCCGTGAATTCGACGGACCACCGAAACC 12476 | | || ||| |||| | || ||||| || || || |||||||| ||||||| || Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676 Query 12477 CGGTGATATGGTGATCATGCAGG--TCCAGGCCGATAAGTGGAATCACGCGGGAATTCTG 12534 ||||| |||||||| |||| || ||| ||| | | ||| || || || |||||| Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCACCGGT--GGCGAACCATGCCGGTATTCTG 618 Query 12535 CTGGAGGGAAATATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAGCGCGTGCCGTA 12593 || || | |||| |||||| |||| ||||||| ||| ||||||||||| ||||| || Sbjct 617 CTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCTTA 559 Query 12594 TGGTGGCTACTGGCAGGAAAGGACGATGAAGATTCTACGTTACAAA 12639 ||||| || ||| | || | || ||||| | || || ||||| Sbjct 558 CGGTGGTTATTGGAAAGAGCGAACTGTGAAGGTGCTGCGCCACAAA 513 Score = 118 bits (130), Expect = 3e-22 Identities = 138/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 11948 AGAAAACCATCGATGCCATCATGGCGCATGCCGCTGCGGAATACCCGCGAGAGTGCTGCG 12007 |||||||||| | || || |||||||| |||| || || || ||| | ||||| |||| Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062 Query 12008 GCGTGGTGGCGCAGAAAAGCCGGGTTGAGCGTTATTTCCCCTGCCGCAACCTTTCTGAAG 12067 || | |||||||||||| ||| ||||||||||| || |||||||| || || | || Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGCGGACA 1002 Query 12068 AGCCGACAGAACATTTTCACCTTTCTCCCGAAGACTACG---CAGCTGCCGAAGACTGGG 12124 | || || || || |||||||| || || || || || | | |||||| || |||| Sbjct 1001 ATCCCACCGAGCAGTTTCACCTGTCACCAGAGGATTATGTGCCCGCTGCC---GAGTGGG 945 Query 12125 GGACG 12129 ||||| Sbjct 944 GGACG 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123839361195210