Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_019708.1
Length=37595
Score E
Sequences producing significant alignments: (Bits) Value
SEQ45982 331 2e-86
SEQ43492 206 6e-49
>SEQ45982
Length=694
Score = 331 bits (366), Expect = 2e-86
Identities = 453/631 (72%), Gaps = 4/631 (1%)
Strand=Plus/Plus
Query 2487 TGTGCCGCCGACCCAATTCAGAAATGACACCATCACGCTTTATGTTGATGGTGGTCGCCA 2546
|||||||||| || || |||| ||| || || | | | |||||||| ||| ||||
Sbjct 37 TGTGCCGCCGTCCGAACCTCGAAAAGACGCCGTCCCAGATCAGGTTGATGGAGGTGGCCA 96
Query 2547 GTATTTGCCTACGCGGTAATGCCTTTGTCGAGAAGCTGTTTATCGGCAATAAGCTGGTTT 2606
| || || | || || | ||||| | ||||| | || |||| ||||||||
Sbjct 97 GCATCTGTTTGCGGGGAGACGCCTTCATTGAGAAAAAAATGATTGGCAGAAAGCTGGTGG 156
Query 2607 CTCTGGTGCCATTGATGCCCCAGAACATGGTAGTAAAGCGGCTGGATACCGGGAGGCTGG 2666
| || || || |||| || |||||||| || || || |||||||||||| | ||
Sbjct 157 CGCTTAATCCGCTGTTGCCTCAAAACATGGTGGTTAAACGTCTGGATACCGGGCAGATGC 216
Query 2667 AATACACCTACACCGAGGACGGCAAAAAACGAGTTATTCCCGAAAAGAACCTGATGCACA 2726
| |||||||||||||||||||||||||| || || || || | | | |||||||||
Sbjct 217 AGTACACCTACACCGAGGACGGCAAAAAGCGCGTGATACCGGTAGACCGGATGATGCACA 276
Query 2727 TCCGGGGATTTGGCCTTGATGGTGTCTGCGGCATGATGCCAATGATGACAGGTCGTGACG 2786
| || || ||||| || ||||||| ||||||||||||||| ||| | || |||||||
Sbjct 277 TTCGCGGCTTTGGTCTGGATGGTGGCTGCGGCATGATGCCGCTGAGTTCTGGCCGTGACG 336
Query 2787 TGATCGGCGCGGCGATGGCCGTCGAAGAATCCGCTGCAAAGATTTTCGAAAATGGCCTGC 2846
|| | || |||||||||||||| || || || || ||||| || || ||||| || ||||
Sbjct 337 TGTTTGGGGCGGCGATGGCCGTTGATGAGTCGGCAGCAAAAATCTTTGAAAACGGTCTGC 396
Query 2847 AAAGCTCCGGGTTTCTTTCAG--CTGACGTGGCGCTTGATAAGGATCAAAGAGAGCGACT 2904
||| || || | |||| | | || ||||| |||| || || ||||||| ||
Sbjct 397 AAACGTCAGG--ATACATCAGTTCGAAAGTTGCGCTGAATAAAGAGCAGCGAGAGCGCCT 454
Query 2905 TCGGGGCTATATGCAGGCCTTTACCGGTTCTAAAAACGCCGGAAAAATTATGGTTCTTGA 2964
|| || || || || ||||||| ||||||||||| ||||| ||||| | ||
Sbjct 455 GCGCCAATACATAGCCGCGTTCGCCGGTTCAAAAAACGCCGGTAAAATGATGGTGTTGGA 514
Query 2965 GGGCGGGCTGAAATATCAGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAGTC 3024
||| | | | || ||||| ||||| ||||| || |||| ||||||||||| |||
Sbjct 515 GGGGGATATAACGTACCAGAATGTCACGATGAATCCTGAAGACGCGCAGATGCTGGAGAG 574
Query 3025 GCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCCGCGTACCGCCATTTATGGTCGG 3084
|| | || ||||| |||||||||||| | |||||||| ||||| || || |||| ||
Sbjct 575 CCGAGCCTTTAGCATTGAGGAAATCTGCCGCTGGTTCCGGGTACCACCTTTCTTGGTGGG 634
Query 3085 CCACACATCGAAACAGAGCAGCTGGGCATCG 3115
|| |||| ||||| ||||||| ||||
Sbjct 635 GCAGGTGACGAAGCAGAGTAGCTGGGAATCG 665
>SEQ43492
Length=1174
Score = 206 bits (228), Expect = 6e-49
Identities = 283/391 (72%), Gaps = 12/391 (3%)
Strand=Plus/Minus
Query 12767 GGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12826
|||||| || || | || ||| ||||||||| ||| |||| | | | | || | | |
Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850
Query 12827 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAGACCCACGG 12886
||||| || || |||||||||||||||| | |||||||||||||||||| |||||
Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790
Query 12887 TATCGAGCTCCACGATTACCGGGTTGATTATCCCTGGTGGGAAAACGACTATCCGGACAA 12946
|| | |||||| |||||||| ||||||||||| |||||||| | | || ||
Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736
Query 12947 CTTCTATCAGGATTGCTGGTATGAGTGCGGATTCCGGGAATTCGACGGGCCACCGAAACC 13006
|||| ||| |||| | || ||||| || ||||| |||||||| ||||||| ||
Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676
Query 13007 CGGCGATATGGTGATCATGCAGG--TCCAGGCTGATAAGTGGAACCACGCTGGAATTCTG 13064
|| || |||||||| |||| || ||| | | | | |||||| || || ||||||
Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCACCGGT--GGCGAACCATGCCGGTATTCTG 618
Query 13065 CTGGAGGGCAATATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAACGCGTGCCGTA 13123
|| || | |||| |||||| |||| ||||||| ||| |||||||| || ||||| ||
Sbjct 617 CTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCTTA 559
Query 13124 TGGTGGCTACTGGCAGGAAAGGACGATGAAG 13154
||||| || ||| | || | || |||||
Sbjct 558 CGGTGGTTATTGGAAAGAGCGAACTGTGAAG 528
Score = 107 bits (118), Expect = 5e-19
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 12478 AGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCG 12537
|||||||||| | || ||||||||||| || | ||||| ||||| | ||||||||||
Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062
Query 12538 GCGTGGTGGCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCG 12597
|| | |||||||| || ||| || ||| || ||||| || |||| || || |
Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGCGGACA 1002
Query 12598 AGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTA 12657
| || || || || ||||||||||| ||||| || |||| | |||| || ||||| |
Sbjct 1001 ATCCCACCGAGCAGTTTCACCTGTCACCAGAGGATTATGTGCCCGCTGCCGAGTGGGGGA 942
Query 12658 CG 12659
||
Sbjct 941 CG 940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 120116600511570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |