Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value SEQ45982 331 2e-86 SEQ43492 206 6e-49 >SEQ45982 Length=694 Score = 331 bits (366), Expect = 2e-86 Identities = 453/631 (72%), Gaps = 4/631 (1%) Strand=Plus/Plus Query 2487 TGTGCCGCCGACCCAATTCAGAAATGACACCATCACGCTTTATGTTGATGGTGGTCGCCA 2546 |||||||||| || || |||| ||| || || | | | |||||||| ||| |||| Sbjct 37 TGTGCCGCCGTCCGAACCTCGAAAAGACGCCGTCCCAGATCAGGTTGATGGAGGTGGCCA 96 Query 2547 GTATTTGCCTACGCGGTAATGCCTTTGTCGAGAAGCTGTTTATCGGCAATAAGCTGGTTT 2606 | || || | || || | ||||| | ||||| | || |||| |||||||| Sbjct 97 GCATCTGTTTGCGGGGAGACGCCTTCATTGAGAAAAAAATGATTGGCAGAAAGCTGGTGG 156 Query 2607 CTCTGGTGCCATTGATGCCCCAGAACATGGTAGTAAAGCGGCTGGATACCGGGAGGCTGG 2666 | || || || |||| || |||||||| || || || |||||||||||| | || Sbjct 157 CGCTTAATCCGCTGTTGCCTCAAAACATGGTGGTTAAACGTCTGGATACCGGGCAGATGC 216 Query 2667 AATACACCTACACCGAGGACGGCAAAAAACGAGTTATTCCCGAAAAGAACCTGATGCACA 2726 | |||||||||||||||||||||||||| || || || || | | | ||||||||| Sbjct 217 AGTACACCTACACCGAGGACGGCAAAAAGCGCGTGATACCGGTAGACCGGATGATGCACA 276 Query 2727 TCCGGGGATTTGGCCTTGATGGTGTCTGCGGCATGATGCCAATGATGACAGGTCGTGACG 2786 | || || ||||| || ||||||| ||||||||||||||| ||| | || ||||||| Sbjct 277 TTCGCGGCTTTGGTCTGGATGGTGGCTGCGGCATGATGCCGCTGAGTTCTGGCCGTGACG 336 Query 2787 TGATCGGCGCGGCGATGGCCGTCGAAGAATCCGCTGCAAAGATTTTCGAAAATGGCCTGC 2846 || | || |||||||||||||| || || || || ||||| || || ||||| || |||| Sbjct 337 TGTTTGGGGCGGCGATGGCCGTTGATGAGTCGGCAGCAAAAATCTTTGAAAACGGTCTGC 396 Query 2847 AAAGCTCCGGGTTTCTTTCAG--CTGACGTGGCGCTTGATAAGGATCAAAGAGAGCGACT 2904 ||| || || | |||| | | || ||||| |||| || || ||||||| || Sbjct 397 AAACGTCAGG--ATACATCAGTTCGAAAGTTGCGCTGAATAAAGAGCAGCGAGAGCGCCT 454 Query 2905 TCGGGGCTATATGCAGGCCTTTACCGGTTCTAAAAACGCCGGAAAAATTATGGTTCTTGA 2964 || || || || || ||||||| ||||||||||| ||||| ||||| | || Sbjct 455 GCGCCAATACATAGCCGCGTTCGCCGGTTCAAAAAACGCCGGTAAAATGATGGTGTTGGA 514 Query 2965 GGGCGGGCTGAAATATCAGAACGTCACTATGAACCCGGAAGCAGCGCAGATGCTTGAGTC 3024 ||| | | | || ||||| ||||| ||||| || |||| ||||||||||| ||| Sbjct 515 GGGGGATATAACGTACCAGAATGTCACGATGAATCCTGAAGACGCGCAGATGCTGGAGAG 574 Query 3025 GCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCCGCGTACCGCCATTTATGGTCGG 3084 || | || ||||| |||||||||||| | |||||||| ||||| || || |||| || Sbjct 575 CCGAGCCTTTAGCATTGAGGAAATCTGCCGCTGGTTCCGGGTACCACCTTTCTTGGTGGG 634 Query 3085 CCACACATCGAAACAGAGCAGCTGGGCATCG 3115 || |||| ||||| ||||||| |||| Sbjct 635 GCAGGTGACGAAGCAGAGTAGCTGGGAATCG 665 >SEQ43492 Length=1174 Score = 206 bits (228), Expect = 6e-49 Identities = 283/391 (72%), Gaps = 12/391 (3%) Strand=Plus/Minus Query 12767 GGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12826 |||||| || || | || ||| ||||||||| ||| |||| | | | | || | | | Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850 Query 12827 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAGACCCACGG 12886 ||||| || || |||||||||||||||| | |||||||||||||||||| ||||| Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790 Query 12887 TATCGAGCTCCACGATTACCGGGTTGATTATCCCTGGTGGGAAAACGACTATCCGGACAA 12946 || | |||||| |||||||| ||||||||||| |||||||| | | || || Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736 Query 12947 CTTCTATCAGGATTGCTGGTATGAGTGCGGATTCCGGGAATTCGACGGGCCACCGAAACC 13006 |||| ||| |||| | || ||||| || ||||| |||||||| ||||||| || Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676 Query 13007 CGGCGATATGGTGATCATGCAGG--TCCAGGCTGATAAGTGGAACCACGCTGGAATTCTG 13064 || || |||||||| |||| || ||| | | | | |||||| || || |||||| Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCACCGGT--GGCGAACCATGCCGGTATTCTG 618 Query 13065 CTGGAGGGCAATATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAACGCGTGCCGTA 13123 || || | |||| |||||| |||| ||||||| ||| |||||||| || ||||| || Sbjct 617 CTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCTTA 559 Query 13124 TGGTGGCTACTGGCAGGAAAGGACGATGAAG 13154 ||||| || ||| | || | || ||||| Sbjct 558 CGGTGGTTATTGGAAAGAGCGAACTGTGAAG 528 Score = 107 bits (118), Expect = 5e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 12478 AGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCG 12537 |||||||||| | || ||||||||||| || | ||||| ||||| | |||||||||| Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062 Query 12538 GCGTGGTGGCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCG 12597 || | |||||||| || ||| || ||| || ||||| || |||| || || | Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGCGGACA 1002 Query 12598 AGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTA 12657 | || || || || ||||||||||| ||||| || |||| | |||| || ||||| | Sbjct 1001 ATCCCACCGAGCAGTTTCACCTGTCACCAGAGGATTATGTGCCCGCTGCCGAGTGGGGGA 942 Query 12658 CG 12659 || Sbjct 941 CG 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120116600511570