Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value SEQ43492 178 3e-40 >SEQ43492 Length=1174 Score = 178 bits (196), Expect = 3e-40 Identities = 287/408 (70%), Gaps = 16/408 (4%) Strand=Plus/Minus Query 12330 GGAGGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 12389 |||||| || || | || ||| ||||||||| ||| |||| | | | | || | | | Sbjct 909 GGAGGGTGACTTGAGAACGATCATGCCGCGCGGGGAATTGCCGCGGATAGGTCGCCAGGT 850 Query 12390 TGTGCTTGGACACTTCGACTGCTGGGGGCTGGTAATGAGCTATTTCCGGCAAACGCATGG 12449 ||||| || || |||||||||||||||| | ||||||||||||||||| ||| || Sbjct 849 CGTGCTGGGGCATACCGACTGCTGGGGGCTGATTATGAGCTATTTCCGGCAGGAGCACGG 790 Query 12450 TATCGAGCTCCACGATTACCGGGTGGATTATCCCTGGTGGGAAAACGCCTATCCGGACAA 12509 || | |||||| |||||||| || |||||||| |||||||| | | || || Sbjct 789 CATAGCGCTCCAGGATTACCGCGTTGATTATCCGTGGTGGGAGCGGGGC------GAAAA 736 Query 12510 TTTTTATCAGGATTGCTGGTATGAATGCGGATTCAGGGAGTTTGACGGCCCGCCTCAGGA 12569 | | || ||| |||| | || ||||| || ||||||| |||||||| || | Sbjct 735 TCTCTACATGGACAACTGGCACGACTGCGGTTTTCGGGAGTTCGACGGCCCACCGATGCC 676 Query 12570 AGGGGACCTCGTCATCATGCAGGT----GCAGGCCGATAAGTGGAATCATGCCGGGATTT 12625 || ||| | || || |||| ||| ||| ||| | | ||| |||||||| ||| Sbjct 675 GGGTGACATGGTGATTATGCTGGTTTCCGCA--CCGGT--GGCGAACCATGCCGGTATTC 620 Query 12626 TACTGGAGGGTAACATGCTGCTGCACCACCTGTACGGACAT-CTGAGCCAGCGCGTGCCG 12684 | || || | | ||| |||||| |||| ||||||| ||| ||||||||||| ||||| Sbjct 619 TGCTTGAAGATGGTATGTTGCTGCCCCACATGTACGG-CATGCTGAGCCAGCGGGTGCCT 561 Query 12685 TATGGTGGCTACTGGCAGGAAAGGACGATGAAGATTCTACGTTACAAA 12732 || ||||| || ||| | || | || ||||| | || || ||||| Sbjct 560 TACGGTGGTTATTGGAAAGAGCGAACTGTGAAGGTGCTGCGCCACAAA 513 Score = 107 bits (118), Expect = 5e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 12041 AGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCG 12100 |||||||||| | || ||||||||||| || | ||||| ||||| | |||||||||| Sbjct 1121 AGAAAACCATAGCGGCTATTATGGCGCACGCCGAGGCTGAGTATCCGTGCGAGTGTTGCG 1062 Query 12101 GCGTGGTGGCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCGCTACCG 12160 || | |||||||| || ||| || ||| || ||||| || |||| || || | Sbjct 1061 GCATCGTGGCGCAGAAATCCCGCGTTGAGCGTTACTTTCCCTGCCGTAATCTGGCGGACA 1002 Query 12161 AGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTA 12220 | || || || || ||||||||||| ||||| || |||| | |||| || ||||| | Sbjct 1001 ATCCCACCGAGCAGTTTCACCTGTCACCAGAGGATTATGTGCCCGCTGCCGAGTGGGGGA 942 Query 12221 CG 12222 || Sbjct 941 CG 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130079143062720