Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10860 127 1e-23
seq3042 105 4e-17
seq4005 102 5e-16
seq4710 91.5 1e-12
>SEQ10860
Length=7223
Score = 127 bits (140), Expect = 1e-23
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||| ||||| || | || | |||| ||||| | ||| ||||| | |||||
Sbjct 1460 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 1519
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| |||||| | |||||| || ||||| || | ||| |||||||| ||||||||||||
Sbjct 1520 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 1579
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|| ||||| |||||||| ||||||| |||||| ||||| | || |||||
Sbjct 1580 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGA 1639
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| ||||| || |||||||| |||||
Sbjct 1640 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 1677
>seq3042
Length=35235
Score = 105 bits (116), Expect = 4e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
|| || |||||||| || || |||||| | || |||||||| |||||| | || || ||
Sbjct 205 GAGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCGTATGTTGCCTTCACGGAG 146
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || | | | ||||| |||||||| || | || | || || || | | |||
Sbjct 145 ACGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCCATGAACCCAACTCAAACT 86
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
|| || ||||| || | ||||||||||| || || |||||| || ||||||| || ||
Sbjct 85 ATCTTCGATGCCAAGCGTTTGATTGGTCGCAAATTCGATGATTCCGCTGTCCAGTCGGAC 26
Query 474572 ATGCGTCATTGGCCTTTTAAGGT 474594
||| || ||||| || ||||
Sbjct 25 ATGAAGCACTGGCCCTTCGAGGT 3
>seq4005
Length=24450
Score = 102 bits (112), Expect = 5e-16
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGT 474729
|| || ||||| | ||||||||||| | |||| |||| ||||||| || | ||
Sbjct 23911 TCCTCGATGGTGCTCACCAAAATGAAAGAGACCGCCGAG-GCATATCTGGGTGGCGTTGT 23969
Query 474730 AACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAA 474789
|| ||||| || | || || || || ||||| ||||| |||||||| || || || ||
Sbjct 23970 CACCGATGCCGTTGTCACGGTGCCCGCCTATTTCAATGACTCTCAACGCCAGGCGACCAA 24029
Query 474790 AGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGC 474849
|||||||| ||||| || || ||||| | || || || || ||||| ||||| ||
Sbjct 24030 GGATGCGGGCGCCATTGCCGGACTCAATGTGCTGCGCATCATCAACGAACCGACAGCGGC 24089
Query 474850 CGCACTTGCTTATGGTCTTGATAAG 474874
|| |||| ||||| || || |||
Sbjct 24090 AGCCATTGCCTATGGCCTGGACAAG 24114
>seq4710
Length=78879
Score = 91.5 bits (100), Expect = 1e-12
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || || ||||| ||||| || || ||||| || ||||| || || |||||||||||
Sbjct 8675 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCCTT 8734
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
|||||| ||||| || ||| ||||| ||||||| || | | || ||||| |
Sbjct 8735 GTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCA-CCTCCAGGGTGA 8793
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || || ||||| ||||| |||||
Sbjct 8794 TGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTG 8827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266201532848540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |