Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 127 1e-23 seq3042 105 4e-17 seq4005 102 5e-16 seq4710 91.5 1e-12 >SEQ10860 Length=7223 Score = 127 bits (140), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || | || | |||| ||||| | ||| ||||| | ||||| Sbjct 1460 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 1519 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| | |||||| || ||||| || | ||| |||||||| |||||||||||| Sbjct 1520 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 1579 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| |||||||| ||||||| |||||| ||||| | || ||||| Sbjct 1580 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGA 1639 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || |||||||| ||||| Sbjct 1640 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 1677 >seq3042 Length=35235 Score = 105 bits (116), Expect = 4e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || |||||| | || |||||||| |||||| | || || || Sbjct 205 GAGATCATTGCCAACGATCAGGGTAATCGTACCACACCATCGTATGTTGCCTTCACGGAG 146 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | | | ||||| |||||||| || | || | || || || | | ||| Sbjct 145 ACGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCCATGAACCCAACTCAAACT 86 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || || ||||| || | ||||||||||| || || |||||| || ||||||| || || Sbjct 85 ATCTTCGATGCCAAGCGTTTGATTGGTCGCAAATTCGATGATTCCGCTGTCCAGTCGGAC 26 Query 474572 ATGCGTCATTGGCCTTTTAAGGT 474594 ||| || ||||| || |||| Sbjct 25 ATGAAGCACTGGCCCTTCGAGGT 3 >seq4005 Length=24450 Score = 102 bits (112), Expect = 5e-16 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGT 474729 || || ||||| | ||||||||||| | |||| |||| ||||||| || | || Sbjct 23911 TCCTCGATGGTGCTCACCAAAATGAAAGAGACCGCCGAG-GCATATCTGGGTGGCGTTGT 23969 Query 474730 AACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAA 474789 || ||||| || | || || || || ||||| ||||| |||||||| || || || || Sbjct 23970 CACCGATGCCGTTGTCACGGTGCCCGCCTATTTCAATGACTCTCAACGCCAGGCGACCAA 24029 Query 474790 AGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGC 474849 |||||||| ||||| || || ||||| | || || || || ||||| ||||| || Sbjct 24030 GGATGCGGGCGCCATTGCCGGACTCAATGTGCTGCGCATCATCAACGAACCGACAGCGGC 24089 Query 474850 CGCACTTGCTTATGGTCTTGATAAG 474874 || |||| ||||| || || ||| Sbjct 24090 AGCCATTGCCTATGGCCTGGACAAG 24114 >seq4710 Length=78879 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||| || || ||||| || ||||| || || ||||||||||| Sbjct 8675 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCCTT 8734 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| || ||| ||||| ||||||| || | | || ||||| | Sbjct 8735 GTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCA-CCTCCAGGGTGA 8793 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||| Sbjct 8794 TGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTG 8827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266201532848540