Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 679 0.0 SEQ43235 113 1e-20 >SEQ32872 Length=2637 Score = 679 bits (752), Expect = 0.0 Identities = 1221/1760 (69%), Gaps = 53/1760 (3%) Strand=Plus/Minus Query 39012 AGACCCTTGCG-GGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGAT 39070 || |||||||| || || ||| ||||||||| || ||||||||||||| || ||| | Sbjct 1828 AGGCCCTTGCGCGGGTGG-CCGAGGGAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGGT 1770 Query 39071 GGCTCGCTTGCT-CA--CGGTCGCCTGAGTCGCTGCCTTC-AGGAAGTCCGGCAGGGAGG 39126 | | |||||| | || |||| || |||| | || ||| |||| | | | | Sbjct 1769 GACGCGCTTGTTGCAGGCGGTGGC----GTCGATCTTGTCGAGGTAGTCGGAGAAGTCCG 1714 Query 39127 TGAACTTCCCCCAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCGCCCACGT 39186 ||||||||||| | || || || |||| |||| | | ||||||| |||| Sbjct 1713 TGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACGT 1654 Query 39187 TCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGT 39246 | || ||| || ||||||||||| || ||| ||| || ||| | | | Sbjct 1653 TGCGGACCGCGCCGAGGCCGAAGCGGATGTC---CTCGCCGACGGACTGGAAGGTGTAGG 1597 Query 39247 TCGAGACCGACACGTC-GGGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGG 39305 || | ||||| |||| | || || || | || | | | || | ||| ||||| Sbjct 1596 CGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTCGGCGAGG 1538 Query 39306 TACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCG 39365 || | || ||||| ||| | ||| |||||||||||||| ||||||||||||||| Sbjct 1537 TAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCATGTACTCG 1478 Query 39366 GCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAG 39425 || | ||| ||| ||| || | || || | | | | || ||||| | || | | Sbjct 1477 GCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCCGGCGGCG 1418 Query 39426 TGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATG 39485 |||| |||||||| |||||||| |||||||| | || | |||||||| ||||||| | Sbjct 1417 TGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGCCTGGACG 1358 Query 39486 GCACCGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAACTCCTTGG 39543 || |||| |||||||| | | | | | || | | ||| || |||||||||||| Sbjct 1357 GCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAACTCCTTGG 1300 Query 39544 CCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGG 39603 |||| ||||||||||||||||||||||| ||| ||| | | |||||||| |||| || Sbjct 1299 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCACCGGCGG 1240 Query 39604 TGTA---CCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCT 39660 |||| | || || | ||||| | | || | |||||||||||| | |||||| Sbjct 1239 TGTAGTTCGCGACCTT---CTGCGAGATCCTCATGATCTGCTCCTGGTACACGATGAGAC 1183 Query 39661 GGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGA 39720 | ||||| |||||||| ||| | ||||||||| | ||| |||||||||||| || Sbjct 1182 CGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGCTCGA 1123 Query 39721 TCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGAC 39780 ||| || | |||||||| ||| ||||||| | ||| | ||| || |||||||| | Sbjct 1122 TCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATCGGGC 1063 Query 39781 CCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGAC 39840 |||| ||||||||||| | | ||| ||||| | |||| | ||||||| | Sbjct 1062 CCGGCCGGTACAGCGCCAGGGACGCCACAATGTCGTTGAAGCCGGTGGGCTTCATGCGCT 1003 Query 39841 GGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGG 39900 ||||||| |||| ||||| ||| |||||||||| ||||||||| || | || Sbjct 1002 TGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCGCGGG 943 Query 39901 CCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGTGCTCCC 39960 ||||||| || || | ||| |||||||| | | |||||||||||||| || ||| | Sbjct 942 CCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCCTCGC 883 Query 39961 CACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGA 40020 | ||||| ||||||||| | |||| | |||| |||||||| || ||||| | Sbjct 882 CCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGCCCCA 823 Query 40021 GGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT-CGAACTGCGTGATC 40079 |||||||||||||||||||||| | ||||| ||| ||||||| | | | | |||||| Sbjct 822 GGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCG-GTGATC 764 Query 40080 GTCGCGCCGTCCTGCGGTCGCACCCACACCGGGATGTGGTCGACCAGAGGCTCGTCGGAC 40139 |||||||| | || ||| ||||| |||||||||||||| ||| ||| | || | Sbjct 763 AGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAGGCC 704 Query 40140 ATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCG 40199 |||||||| || ||||| | || ||| ||||| | || || || ||||| ||| Sbjct 703 ATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGGGCG 644 Query 40200 GTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCC 40259 |||| || ||||||| | |||| |||| || || | |||||||| |||||| Sbjct 643 TCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCGGCC 584 Query 40260 TCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCAT- 40318 | |||| || |||||||| | | | ||| || || || || | || || | Sbjct 583 GCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCC------GGACAGCGGGATGTCCTTC 530 Query 40319 --CACGTCGGCCGGGTAC---GCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT-- 40368 | | | |||||| | |||||||| | | ||| ||| |||||| ||||| Sbjct 529 GCCGCCTGCGCCGGGGGCAGGGCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGG 470 Query 40369 -TGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGT-CCGTACGT 40426 || | ||||||| |||||||| ||||| | | ||| | |||| ||| | || Sbjct 469 CCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCA-CCGTGCCGAAGGT 411 Query 40427 CGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCC 40486 || ||| ||||||||||| | || | ||| ||| | |||| |||||| |||| Sbjct 410 GATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCTCG-- 353 Query 40487 ACGACGCCGGTCAT---CGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTT 40543 ||||||||||| ||||||||||||||| |||||| ||| ||| || ||||| Sbjct 352 -GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTT 294 Query 40544 CAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40603 ||||| |||||||| || || |||||||| | ||||||| || ||||||| || | Sbjct 293 GAGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGC 234 Query 40604 GTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTC 40663 |||||||||||| | ||||| || ||||| || || |||||||| ||| |||| | Sbjct 233 GTAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGA 174 Query 40664 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGAT 40723 || ||||| ||| ||||||||||||||||| |||||| ||||| || | Sbjct 173 GCGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTC 114 Query 40724 GATCATGTCGATCTCGTACT 40743 ||| | ||||||||||| Sbjct 113 GATGACACTGATCTCGTACT 94 >SEQ43235 Length=559 Score = 113 bits (124), Expect = 1e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 41096 GTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATC 41155 |||| | ||||| ||||||| ||| | ||| |||||| | |||| | | || || Sbjct 1 GTGGCAGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTC 60 Query 41156 CTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTC 41215 || |||||||| |||||| | ||||||||||||||| ||||| | |||| || Sbjct 61 GTCCCGGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTC 120 Query 41216 GCGACCCAGGATCTCCAGCCA-GTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCA 41274 ||| || ||| ||| |||| ||||| |||||| || ||||||| | |||| || | Sbjct 121 GCGGCCGTAGATGTCCTGCCATTTCGCC-GCGGCCTCGAGCGCCTCGTTGAACTGGCCGA 179 Query 41275 GGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGC 41334 | ||||| |||| || ||||| ||||| || ||||| ||||| |||| ||| Sbjct 180 GCCGCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGG 239 Query 41335 TGCACTCGGCG 41345 | ||||||| Sbjct 240 CGTGCTCGGCG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163795073584140