Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 675 0.0 SEQ43235 93.3 1e-14 >SEQ32872 Length=2637 Score = 675 bits (748), Expect = 0.0 Identities = 1220/1760 (69%), Gaps = 53/1760 (3%) Strand=Plus/Minus Query 39300 AGACCCTTGCG-GGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGAT 39358 || |||||||| || || ||| ||||||||| || ||||||||||||| || ||| | Sbjct 1828 AGGCCCTTGCGCGGGTGG-CCGAGGGAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGGT 1770 Query 39359 GGCTCGCTTGCT-CA--CGGTCGCCTGAGTCGCTGCCTTC-AGGAAGTCCGGCAGGGAGG 39414 | | |||||| | || |||| || |||| | || ||| |||| | | | | Sbjct 1769 GACGCGCTTGTTGCAGGCGGTGGC----GTCGATCTTGTCGAGGTAGTCGGAGAAGTCCG 1714 Query 39415 TGAACTTCCCCCAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCGCCCACGT 39474 ||||||||||| | || || || |||| |||| | | ||||||| |||| Sbjct 1713 TGAACTTCCCCTTCTCCTCGCGCGCCGCGATGATCGAGTCGACGACGTCCTCGCCGACGT 1654 Query 39475 TCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGT 39534 | || ||| || ||||||||||| || ||| ||| || ||| | | | Sbjct 1653 TGCGGACCGCGCCGAGGCCGAAGCGGATGTC---CTCGCCGACGGACTGGAAGGTGTAGG 1597 Query 39535 TCGAGACCGACACGTC-GGGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGG 39593 || | ||||| |||| | || || |||| || | | | || | ||| ||||| Sbjct 1596 CGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTCGGCGAGG 1538 Query 39594 TACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCG 39653 || | || ||||| ||| | ||| |||||||||||||| ||||||||||||||| Sbjct 1537 TAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCATGTACTCG 1478 Query 39654 GCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAG 39713 || | ||| ||| ||| || | || || | | | | || ||||| | || | | Sbjct 1477 GCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCCGGCGGCG 1418 Query 39714 TGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATG 39773 |||| |||||||| |||||||| |||||||| | || | |||||||| ||||||| | Sbjct 1417 TGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGCCTGGACG 1358 Query 39774 GCACCGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAACTCCTTGG 39831 || |||| |||||||| | | | | | || | | ||| || |||||||||||| Sbjct 1357 GCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAACTCCTTGG 1300 Query 39832 CCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGG 39891 |||| ||||||||||||||||||||||| ||| ||| | | |||||||| |||| || Sbjct 1299 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCACCGGCGG 1240 Query 39892 TGTA---CCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCT 39948 |||| | || || | ||| | | | || | ||||||||||| | |||||| Sbjct 1239 TGTAGTTCGCGACCTT---CTGCGAGATCCTCATGATCTGCTCCTGGTACACGATGAGAC 1183 Query 39949 GGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGA 40008 | ||||| |||||||| ||| | ||||||||| | ||| |||||||||||| || Sbjct 1182 CGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGCTCGA 1123 Query 40009 TCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGAC 40068 ||| || | |||||||| ||| ||||||| | ||| | ||| || |||||||| | Sbjct 1122 TCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATCGGGC 1063 Query 40069 CAGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGAC 40128 | || ||||||||||| | | ||| ||||| | |||| | ||||||| | Sbjct 1062 CCGGCCGGTACAGCGCCAGGGACGCCACAATGTCGTTGAAGCCGGTGGGCTTCATGCGCT 1003 Query 40129 GGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGG 40188 ||||||| |||| ||||| ||| |||||||||| ||||||||| || | || Sbjct 1002 TGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCGCGGG 943 Query 40189 CCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGTGCTCCC 40248 ||||||| || || | ||| |||||||| | | |||||||||||||| || ||| | Sbjct 942 CCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCCTCGC 883 Query 40249 CACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGA 40308 | ||||| ||||||||| | |||| | |||| |||||||| || ||||| | Sbjct 882 CCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGCCCCA 823 Query 40309 GGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT-CGAACTGCGTGATC 40367 |||||||||||||||||||||| | ||||| ||| ||||||| | | | | |||||| Sbjct 822 GGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCG-GTGATC 764 Query 40368 GTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGCGGCTCGTCGGAC 40427 |||||||| | || || ||||| |||||||||||||| ||||||| | || | Sbjct 763 AGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAGGCC 704 Query 40428 ATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCG 40487 |||||||| || ||||| | || ||| ||||| | || || || ||||| ||| Sbjct 703 ATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGGGCG 644 Query 40488 GTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCC 40547 |||| || ||||||| | |||| |||| || || | |||||||| |||||| Sbjct 643 TCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCGGCC 584 Query 40548 TCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCAT- 40606 | |||| || |||||||| | | | ||| || || || || | || || | Sbjct 583 GCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCC------GGACAGCGGGATGTCCTTC 530 Query 40607 --CACGTCGGCCGGGTAC---GCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT-- 40656 | | | |||||| | |||||||| | | ||| ||| |||||| ||||| Sbjct 529 GCCGCCTGCGCCGGGGGCAGGGCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCTGG 470 Query 40657 -TGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGT-CCGTACGT 40714 || | ||||||| |||||||| ||||| | | ||| | |||| ||| | || Sbjct 469 CCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCA-CCGTGCCGAAGGT 411 Query 40715 CGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCC 40774 || ||| ||||||||||| | || | ||| ||| | |||| |||||| |||| Sbjct 410 GATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCTCG-- 353 Query 40775 ACGACGCCGGTCAT---CGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTT 40831 ||||||||||| ||||||||||||||| |||||| ||| ||| || ||||| Sbjct 352 -GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGGTT 294 Query 40832 CAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40891 ||||| |||||||| || ||||||||||| | ||||||| || ||||||| || | Sbjct 293 GAGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGTGC 234 Query 40892 GTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTC 40951 |||||||||||| | ||||| || ||||| || || |||||||| ||| |||| | Sbjct 233 GTAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATGGA 174 Query 40952 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGAT 41011 || ||||| ||| ||||||||||||||||| |||||| ||||| || | Sbjct 173 GCGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATGTC 114 Query 41012 GATCATGTCGATCTCGTACT 41031 ||| | ||||||||||| Sbjct 113 GATGACACTGATCTCGTACT 94 >SEQ43235 Length=559 Score = 93.3 bits (102), Expect = 1e-14 Identities = 174/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 41384 GTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATC 41443 |||| | ||||| ||||||| ||| | ||| |||||| | |||| | | || || Sbjct 1 GTGGCAGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTC 60 Query 41444 CTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTC 41503 || |||||||| |||||| | |||||||||||| ||||| |||||||| ||| Sbjct 61 GTCCCGGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTC 120 Query 41504 ACGCCCGAAGACCTCCAG--GTACCGAC-CGGCCTCCTTCACGGCCTCGTCGTACTGCCC 41560 || ||| ||| ||| | | || | ||||||| | ||||||| | |||| || Sbjct 121 GCGGCCGTAGATGTCCTGCCATTTCGCCGCGGCCTC---GAGCGCCTCGTTGAACTGGCC 177 Query 41561 GAGGTTCAGCCGGGTCATGATCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTC 41620 ||| |||||||||| | | | ||| || || ||||| ||| ||| ||| || Sbjct 178 GAGCCGCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTC 237 Query 41621 GTTGTGCTCGGCG 41633 | |||||||||| Sbjct 238 GGCGTGCTCGGCG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164754547987140