Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value SEQ14182 132 1e-25 seq5329 118 3e-21 seq2872 107 6e-18 seq9469 89.7 2e-12 >SEQ14182 Length=7706 Score = 132 bits (146), Expect = 1e-25 Identities = 191/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | |||||||||||| ||||| ||| | || || ||||| ||| Sbjct 6761 TCCATAGCCTTGATCAGACGACGCTGAATGTAACCGGTTTCGGCAGTCTTCACAGCCGTA 6820 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| ||||| || ||||| | | ||| || ||| || || Sbjct 6821 TCAATGAGACCTTCACGACCGCCCATGGCGTGGAAATAGAACTC-GGAGGGCGTCAGGCC 6879 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | ||| |||| ||||| || | | |||||| || ||||||| |||| | Sbjct 6880 GGCGAGGTATGAGTTCTCCACGAATCCTCTGGACTCGGGACCGTAATCGTC---CTTGAT 6936 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || |||||||| || | ||| | |||||||||| ||||| || || ||||||||||| Sbjct 6937 GAAATGTGGCAGCGTGCGCTTCCTAAAGCCGTATGGAATACGTTTGCCCTCAACGTTCTG 6996 Query 302811 CTGTCCCAGGCACGAAATCATCTG 302834 || |||| || | ||| | ||| Sbjct 6997 TTGACCCACACAAGCAATAACCTG 7020 >seq5329 Length=14508 Score = 118 bits (130), Expect = 3e-21 Identities = 202/287 (70%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 || || ||||| |||||||||||||||||| | || || ||||| ||||| || ||| Sbjct 3692 TTAATCAAACGTCGCTGAATATAACCAGTTTCTGCCGTCTTCACAGCCGTATCGATGAGA 3633 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AGCCCCCCAATA 302700 || ||||||| ||||| ||||| | ||||| ||||| | ||| | || |||| | Sbjct 3632 CCTTCACGACCGCCCATGGCATG--AAAATAG-AATTCCGATGGCGTCAATCCACCAAGA 3576 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG---TCGAACTTGGTAAAGTGT 302757 | ||| |||| |||||||| |||||||| || | || ||| || | || || Sbjct 3575 TACGAGTTCTCCACGAAACCGCGCGCCTC---CGGACCGCTATCGTTTTTTATGAAATGC 3519 Query 302758 GGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCC 302817 ||||| || | |||| | || || || || | || || || || |||||||| ||| Sbjct 3518 GGCAGCGTGCGCTTCTTGAATCCATAAGGTATTCTCTGGCCCTCCACATTCTGCTGACCC 3459 Query 302818 AGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 | |||| ||| | |||||| ||||| | | ||||||||||| Sbjct 3458 ACACACGCAATGACCTGCGAGATATTAATGTTGGATCCCTTGGAGCC 3412 >seq2872 Length=9359 Score = 107 bits (118), Expect = 6e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 || || || |||||||| |||||| |||||| |||||| | | ||| |||| Sbjct 3708 TTGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGC 3649 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 |||||| || || |||| || ||| ||||||||| | |||||||| ||||| ||| Sbjct 3648 CAAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAAT 3589 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 | ||||| | || | || ||||| || || |||| ||| | ||| Sbjct 3588 GTGCATTCCGAAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGA 3529 Query 133409 CACAAACTATTCAACGCCATT--AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGG 133466 || | || ||||| |||||| | ||| | || | |||| ||| | ||||||| Sbjct 3528 GACTATCTCTTCAATGCCATTGAAACGA--TGCCGGCTGTTAAGCGGAAGGCAGACTGGG 3471 Query 133467 CTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 || || |||||| ||| ||| | |||| | ||| | |||||||||||| Sbjct 3470 CTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTG 3411 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGT 133585 || || ||||| || |||||||| | | | ||| || || || ||||| || |||||| Sbjct 3410 CTGTTGAAGGCATCTTCTTCAGTGG-GAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGT 3352 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTC 133626 || || | |||||||| || || |||||| | || || Sbjct 3351 GGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTC 3311 >seq9469 Length=7265 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| || || |||||||| ||||| ||||||||||| || || ||||| || Sbjct 406 TGCACCGTGAGAGATTTGGCAATCACGTTCCATCTCACCGAAACGCAGGCCGCCATCACG 347 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 ||| || ||||| ||||||||| ||| | || |||||| || || ||| Sbjct 346 AGCTCTGCCCTCCATAGGCTGACGCACAAGAATCTGCACAGGACCACGGGCACGCGAATG 287 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| || | ||||| |||||||||||||| || | | ||| || | ||| Sbjct 286 GATCTTGTCGTCCACCATGTGCTTGAGACGCTGATAATAAGTGGGGCCAAGGAA 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470948167447385