Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value SEQ32872 632 7e-177 SEQ43235 91.5 5e-14 >SEQ32872 Length=2637 Score = 632 bits (700), Expect = 7e-177 Identities = 1213/1762 (69%), Gaps = 57/1762 (3%) Strand=Plus/Minus Query 38760 AGACCCTTGCG--GGTTGCCCCGGTCGAGTCGAAGGCACCGGCCTTGATCAGGGACTCGA 38817 || |||||||| ||| ||| || ||||||||||| |||||||||||||| || ||| Sbjct 1828 AGGCCCTTGCGCGGGTGGCCGAGG--GAGTCGAAGGCGCCGGCCTTGATCAGTGAGTCGG 1771 Query 38818 TGGCTCGCTTGCTCACCGTCGCCTGAGTCGCTGCCTTC-AGGAAGTCCGGCAGGGAGGTG 38876 || | |||||| | | | || | |||| | || ||| |||| | | | ||| Sbjct 1770 TGACGCGCTTGTTG-CAGGCGGTGGCGTCGATCTTGTCGAGGTAGTCGGAGAAGTCCGTG 1712 Query 38877 AACTTCCCCCAGGCTTCCCGGAGTTCAGCGATCTCCG---CGACCATGCCCTCGCCCACG 38933 ||||||||| | || || | ||||| || |||| | | ||||||| ||| Sbjct 1711 AACTTCCCCTTCTCCTCGCGCG---CCGCGATGATCGAGTCGACGACGTCCTCGCCGACG 1655 Query 38934 TTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTG 38993 || || ||| || ||||||||||| || ||| ||| || ||| | | | Sbjct 1654 TTGCGGACCGCGCCGAGGCCGAAGCGGATGTC---CTCGCCGACGGACTGGAAGGTGTAG 1598 Query 38994 TTCGAGACCGACACGTC-GGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAG 39052 || | ||||| |||| | || || || | || | | | || ||| |||| Sbjct 1597 GCGGACTCGTTGACGTCCGGGCTG-AGCACGCGCACCCCGAGGTGGCGGCAGTCGGCGAG 1539 Query 39053 GTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTC 39112 ||| | || ||||| ||| | ||| |||||||||||||| |||||||||||||| Sbjct 1538 GTAGATCGCGGACTTGTCCTTCTTGTCCGCCACCGAGGTGAGCAGCGCCGCCATGTACTC 1479 Query 39113 GGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGA 39172 ||| | ||| ||| ||| | | || || | | | | || ||||| | || | Sbjct 1478 GGCGGTGTAATGCTCCTTGAGGTAGGCGGTCCAGAAGCTCACCAGACCGTAGCCGGCGGC 1419 Query 39173 GTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGAT 39232 ||||| |||||||| |||||||| ||||| || | || | |||||||| ||||||| Sbjct 1418 GTGCGACTTGTTGAGCGCGTAGCCGGCGAACGGCAGCACCGTGTCCCACAGGGCCTGGAC 1359 Query 39233 GGCACCGTCCGAGTAGCCTCGCTCGCGCGC-TCCCTTCTG-GAAGTTCACGAACTCCTTG 39290 ||| |||| |||||||| | | | | | || | | ||| || ||||||||||| Sbjct 1358 GGCCTCGTCGGAGTAGCC--GTTGGACTTCATGCCGGCGGCGAACTTGTCGAACTCCTTG 1301 Query 39291 GCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGG 39350 ||||| ||||||||||||||||||||||| ||| ||| | | |||||||| ||| | Sbjct 1300 GCCAGCACCTCGGGCTTCTTCTTGCCCATGGCCTTGCGGAACCCGTCGGCCTCACCGGCG 1241 Query 39351 GTGTA---CCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAAC 39407 ||||| | || || | ||| | | | || | |||||||||||| | ||| | Sbjct 1240 GTGTAGTTCGCGACCTT---CTGCGAGATCCTCATGATCTGCTCCTGGTACACGATGAGA 1184 Query 39408 TGGAATGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTG 39467 | | ||| |||||||| ||| | ||||||||| | ||| |||||||||||| | Sbjct 1183 CCGTAGGTCTCCTCCAGGATGTCCTTGATGGACTCGGCGAGCTCCGGGTGGATCGGCTCG 1124 Query 39468 ATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGA 39527 |||| || | |||||||| ||| ||||||| | ||| | ||| || |||||||| Sbjct 1123 ATCGGCTTGCGGCCGTTCTTGCGGTCCGCGTAGTCCCAGTGCGCCCCGACACCCATCGGG 1064 Query 39528 CCCGGACGGTACAGCGCGACG-ACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAG 39586 ||||| ||||||||||| | | ||| | | ||||| | |||| | ||||||| | Sbjct 1063 CCCGGCCGGTACAGCGCCAGGGACGCCACA-ATGTCGTTGAAGCCGGTGGGCTTCATGCG 1005 Query 39587 GCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCT 39646 ||||||| |||| ||||| ||| |||||||||| ||||||||| || | Sbjct 1004 CTTGAGCAGTTCCTGCATGCCGCCGGAGTCCAGCTGGAAGATGCCGAGCGTGTCACCGCG 945 Query 39647 GGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCAGGTCGACGTGCTC 39706 ||||||||| || |||| || | |||||| | | |||||||||||||| || ||| Sbjct 944 GGCCAGCAGTTCATAGGACGCCGGGTCGTCGGTCGACAGGTTCTCCAGGTCGAAGTCCTC 885 Query 39707 CCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCC 39766 || ||||| ||||||||| | |||| | |||| |||||||| || ||||| Sbjct 884 GCCCCGGTTCTTCTTGATGTTCTCCAGGCAGTCGGCGATGACGGTGAGGTTGCGCAGCCC 825 Query 39767 GAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGT-CGAACTGCGTGA 39825 ||||||||||||||||||||||| | ||||| ||| ||||||| | | | | |||| Sbjct 824 CAGGAAGTCCATCTTCAGCAGGCCGATGGCCTCACAGGCCGGGTAGGGCCAGCCG-GTGA 766 Query 39826 TCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGAGGCTCGTCGG 39885 || |||||||| | || || ||||| |||||||||||||| ||| ||| | || Sbjct 765 TCAGGGCGCCGTCGTTGGGGCGCTTCCACATCGGGATGTGGTCGAGCAGCGGCACCGAGG 706 Query 39886 ACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCG 39945 ||||||||| || ||||| | || ||| ||||| | || || || ||||| | Sbjct 705 CCATGATCACTGCGCAGGCGTGGCCGCCGGCCTGGCGGACCACGCCCTCCAGGCCGAGGG 646 Query 39946 CGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGG 40005 || |||| || ||||||| | |||| |||| || || | |||||||| |||| Sbjct 645 CGTCGTCGTAGATCTCCTTGACCACCGGATCGGTCTCGATGAGGGTGCGGATCTCCGCGG 586 Query 40006 CCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCATCGAGTTGCCCA 40065 || | |||| || |||||||| | | | |||||| || || || | || || Sbjct 585 CCGCGCCGTAGCGCGGGTGCTCCGGATCCATGATGCC------GGACAGCGGGATGTCCT 532 Query 40066 T---CACGTCGGCCGGGTAC---GCCTTGGTCAGCTTCTCGCCGACCTGGAA---GGGCT 40116 | | | | |||||| | |||||||| | | ||| ||| |||||| ||||| Sbjct 531 TCGCCGCCTGCGCCGGGGGCAGGGCCTTGGTGATCCGGTCGGCGATCTGGAAGCCGGGCT 472 Query 40117 ---TGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGT-CCGTAC 40172 || | | |||| || |||||||| ||||| | | ||| | |||| ||| | Sbjct 471 GGCCGTGGTGGGCGCGGGCGGCGTCCTTGATCGCCTGCTTGGTCTTCA-CCGTGCCGAAG 413 Query 40173 GTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCG 40232 || || ||| ||||||||||| | || | ||| ||| | |||| |||| | |||| Sbjct 412 GTGATGACCTGGGCGACCTTGTCCTCGCCCCAGTTCTGGGCGGCGTAGCGGATCATCTCG 353 Query 40233 CCACGACGCCGGTCAT---CGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGG 40289 ||||||||||| ||||||||||||||| |||||| ||| ||| || ||| Sbjct 352 ---GAACGCCGGTCATCGGCGAAGTCGATGTCGATATCGGGGGCGGAGGGGCGTTCCGGG 296 Query 40290 TTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGG 40349 || ||||| |||||||| || ||||||||||| | ||||||| || ||||||| || Sbjct 295 TTGAGGAATCGCTCGAACATCAGCCCGTGCTCGATGGGGTCGATGTTGGTGATCGTCAGT 236 Query 40350 ACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTC 40409 ||||||||||||| | ||||| || ||||| || || |||||||| ||| ||| | Sbjct 235 GCGTAGGCGACCAGGGCGCCGGCGGCGGAGCCACGGCCCGGGCCGACGGAGATGCCGATG 176 Query 40410 TCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGG 40469 || ||||| ||| ||||||||||||||||| |||||| | ||| || | Sbjct 175 GAGCGGGCGTGCTTGATGAGGTCGGCGACGACGAGGAAGTAGGACGGGTAGCCCTTCATG 116 Query 40470 ATGATCATGTCGATCTCGTACT 40491 ||| | ||||||||||| Sbjct 115 TCGATGACACTGATCTCGTACT 94 >SEQ43235 Length=559 Score = 91.5 bits (100), Expect = 5e-14 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 40844 GTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTC 40903 |||| | ||||| ||||||| ||| | ||| |||||| | |||| | | ||||| Sbjct 1 GTGGCAGTCGTTGGTGACCAGCGGCGGGAGGGCGAGGCGGCGTCCGATCTCGAGGAGGTC 60 Query 40904 GTCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAGCAGGTACCGGTC 40963 ||| |||||||| |||||| | | ||||||||||||| ||||| | ||| ||| Sbjct 61 GTCCCGGACCCGCTTCTCGATGGACAGGCCGTGGTCCATGAGCTCGAGGAAGTAGTTGTC 120 Query 40964 ACGCCCGAAGACCTCCAGGTACCGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGAG 41023 || ||| ||| ||| | | | || ||| | ||||||| | |||| ||||| Sbjct 121 GCGGCCGTAGATGTCCTGCCATTTCGCCGCGGCCTCGAGCGCCTCGTTGAACTGGCCGAG 180 Query 41024 GTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTCGTT 41083 ||||||||| | | | ||| |||||||| || ||| ||| ||| ||| Sbjct 181 CCGCAGCCGGGTCTGCACCTCGCCGGAGGGGCAGCCGGTGGTGGCGATGCTGCCGTCGGC 240 Query 41084 GTGCTCGGCG 41093 |||||||||| Sbjct 241 GTGCTCGGCG 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163235380182390