Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021346.1 Length=157482 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 141 9e-29 SEQ32872 136 4e-27 SEQ26880 125 7e-24 >SEQ29447 Length=7397 Score = 141 bits (156), Expect = 9e-29 Identities = 114/137 (83%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 78692 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 78751 |||||||||| ||||||||| |||||||||||||||| |||||||||||| || || || Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 78752 GACCATGACTCGGTCGGCCTGTTCCAGCAGCGTCCGTCC---TGGGGCACGGTGGCCCAG 78808 |||||||| || |||| |||||||||||||||| | || |||||||| || || ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 78809 CGGATGAACCCGCGCGA 78825 || ||| | |||| ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ32872 Length=2637 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 116572 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 116631 ||||||||||||||||||||||| ||| | |||||| |||||| || |||||| Sbjct 191 CGGCCCGGGCCGTGGCTCCGCCGCCGGCGCCCTGGTCGCCTACGCACTGACGATCACCAA 250 Query 116632 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGA 116691 |||||||| ||| || ||| |||||||||||||| ||| |||||||||| |||||| Sbjct 251 CATCGACCCCATCGAGCACGGGCTGATGTTCGAGCGATTCCTCAACCCGGAACGCCCCTC 310 Query 116692 CTTCCCCGACATCGACGTCGACTTC 116716 | |||||| |||||| |||||||| Sbjct 311 CGCCCCCGATATCGACATCGACTTC 335 >SEQ26880 Length=5820 Score = 125 bits (138), Expect = 7e-24 Identities = 236/347 (68%), Gaps = 24/347 (7%) Strand=Plus/Minus Query 145531 ATCAGCGAGAAGGGCATTGTCATCGCGCTCGCCGTCGCCCTGGTCGAGACCAACCTCAAG 145590 |||||||| |||||||| ||||| |||||| ||| ||||| ||| | | | ||| Sbjct 1571 ATCAGCGACCAGGGCATTAAAATCGCCCTCGCCACCGCACTGGTGGAGTCAGGCATGAAG 1512 Query 145591 ATGTACGCCAATCGGTCGGACCCGGAGAGCCTCAATTTCCCGCACGACGCGGTCGGCAGC 145650 ||||||||||| | | ||| || ||| | | || ||||| ||||| ||||||||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 145651 GACGCCAACAGCGTCGGCGTCTTCCAGCAGCGCG---CTCCCTGGTGGGGCACGGTCGCC 145707 ||||| || |||||| | ||||||||||||| | | ||||||||| ||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAA 1392 Query 145708 GATCGCATGGACGTCGCGCGCAGCGCGGCGATGTTCTACAACAGCCTGTATCGCCAGCGC 145767 || ||||||||| | ||| ||| | ||||||||| || || | Sbjct 1391 GACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGAC-----GT----------C 1347 Query 145768 GTCGGCGGCGCCGACTACAACACCGATCGGGTCTCTCCCGGCACCTGGGGCCAGATGGTC 145827 ||| || ||| ||||||||||||| | | | || ||| || | ||| || Sbjct 1346 CTCGACGACGCGGACTACAACACCG---GCGAC---CCGGGCGCCCACGCGCAGCGCGTG 1293 Query 145828 CAGCAGTCCGCCTTTCCGGATCGCTACGACAAACGCATGGCCGAGGC 145874 |||| ||| || ||||| || |||||| ||| |||| |||||| Sbjct 1292 CAGCGGTCAGCATTTCCCGACCGCTACAACACGAAGATGGGCGAGGC 1246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 78692 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 78751 |||||||||||| |||||||| ||||| |||||||||| ||||| || | ||| | Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 78752 GACCATGACTCGGTCGGCCTGTTCCAGCAGCG 78783 ||| |||||||||||||| ||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503524045463600