Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value SEQ22368 102 7e-17 SEQ37766 87.8 2e-12 >SEQ22368 Length=3621 Score = 102 bits (112), Expect = 7e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 21384 GGCATCACGCAGCACGCCCTCGCGAAGGCCATTGGCGTCCCGCCGCGCCGAATCAACGAG 21443 || ||||| ||| || |||| || ||||| ||||||||||| ||||| ||||||||| Sbjct 502 GGGATCACCCAGAACTCCCTGGCTGTCGCCATCGGCGTCCCGCCACGCCGCATCAACGAG 561 Query 21444 ATCGTGAAGCGCAAGCGTCGCATCACGCCGGACACCGCGCTGCGACTGGGCCGGTACTTC 21503 ||||| | ||| || | || | |||| |||||||| ||| |||| || |||||| Sbjct 562 ATCGTCCACGGCACACGCGGGGTCTCCACGGATACCGCGCTCCGATTGGGGCGCTACTTC 621 Query 21504 GGCGTGAGCGCTGCGTTCTGGCTGAACATGCAGTCCCACCACGACATCGAG 21554 ||| | || |||||||||||| | ||| || ||||||||||| Sbjct 622 GGCACCACGGCGCAGTTCTGGCTGAATCTCCAGCAGGACTACGACATCGAG 672 >SEQ37766 Length=2931 Score = 87.8 bits (96), Expect = 2e-12 Identities = 358/545 (66%), Gaps = 46/545 (8%) Strand=Plus/Minus Query 25664 CTCGTCGAGTTCGCCGGTCGCGCGTGCTACCAGTCGTTCCACCGGCCGAACCCGAAGACG 25723 ||||||||||||||||| ||||| |||||| || ||| | |||||||||||| | || Sbjct 2192 CTCGTCGAGTTCGCCGGCCGCGCCTGCTACGAGACGTGGGATCGGCCGAACCCGCACACC 2133 Query 25724 GCAACGAACCGCACGTACCTGGCCAACACG-CAGCGCCAGCGC-CAC--GGGTC-GATCG 25778 || |||| || ||| || || ||| || | || ||| | | | | ||| Sbjct 2132 GCGACGA--CGGACGCCTATGTCCGCCACATCATGGATGTCGGGCACCTGAGCCTGCTCG 2075 Query 25779 AGGAGCACGCGTCGGTGAGCTTCTGGTTCACCGGTCTGTCGCGCACCTGCTCGCACGAGG 25838 || ||||| |||| || | | | ||| |||| ||| |||| |||| ||| Sbjct 2074 AG---CACGCCTCGGCGACGATGTACCTGCGTGGTGTGTCCCGCTCCTGTGCGCAGGAGA 2018 Query 25839 TCGTCCGGCACCGGCACTTCTCGTACAGCCAGCTGTCCCAGCGGTACGTCGACAGCAACG 25898 || | ||||||||||||||||||| ||| ||||| || ||||| ||||| | | || || Sbjct 2017 TCATGCGGCACCGGCACTTCTCGTTCAGTCAGCTCTCGCAGCGTTACGT-GCCGGC--CG 1961 Query 25899 G--GGCCGCGAT--CGTGCTGCCC---CCGGCCGTCGTCCAGCTGGGCCTGGCCCACCTG 25951 | || || ||| |||| ||||| ||| || || | || ||||| | ||| Sbjct 1960 GCCGGTCG-GATGTCGTGGTGCCCGAACCGATCGCCGGTGACGCGGACCTGGAGGAACTG 1902 Query 25952 TTCGACGAGGTCGACGA-----CGCGGTGAGCG-ACGC----CTACTCGGTCATCCAGAA 26001 ||| || | || ||||| ||| ||| || || || | || | | Sbjct 1901 TTCCTGCGGGCCAGTGATGTCTCGCGGCAGGCGTACGAGGAACTGCT-GGACGCCCTGGA 1843 Query 26002 GGCGC-----TCA------TCGA-CGCGGGCCTGAAGAAGAAGCAGGCCAACCAGGCGGC 26049 || || || |||| | ||| ||| ||||||||||| |||||||| Sbjct 1842 GGAGCGGTTCTCCGGCGAGTCGAACACGGTGCTGCGCGAGAAGCAGGCCCGGCAGGCGGC 1783 Query 26050 CCGCGCCGTCCTCATGGGCGCGACCGAGACCCGCATGGTGATGACCGGCAACTACCGGGC 26109 || || ||||| | ||||||||||||||| | || |||||||| ||| ||| Sbjct 1782 GCGGGCGGTCCTGCCGAACGCGACCGAGACCCGGTTCGTCATGACCGGGAACCTGCGGAG 1723 Query 26110 GTGGAAGGGCTTCCTCACGCAGCGCGACTCGGAGGCCGCCGACCCGGAGATCCG-CGCGT 26168 ||| | |||| || || ||| | | | || |||||||||||||||||| |||| Sbjct 1722 CTGGCGGCACTTCATCGCGATGCGGGCCGCCGAACACGCCGACCCGGAGATCCGCCGCG- 1664 Query 26169 TGGCG 26173 ||||| Sbjct 1663 TGGCG 1659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455810759083400