Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value SEQ45334 174 2e-38 SEQ36764 111 2e-19 >SEQ45334 Length=507 Score = 174 bits (192), Expect = 2e-38 Identities = 260/364 (71%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 87669 GCAGATGAAGATTTAGGCTTCCTGCCCGGCGACGTTGCCGAAAAATTCGCCCCGTACTTC 87728 || |||||||| | || ||| |||| || || | |||| || |||||||| || ||| Sbjct 99 GCGGATGAAGACCTCGGTTTCTTGCCGGGGGATATCTCCGAGAAGTTCGCCCCTTATTTC 158 Query 87729 CGCCCTGTTTATGACGTTCTTCAAAAACGTCTCGGTAGCCGCTACCTGCAATACTGCCTT 87788 ||||| || |||||| |||| | ||| | || || |||| |||||||| Sbjct 159 CGCCCGGTGTATGACATTCTGGTACGTCGTTTAGGATCTTCCTTTATGCAGTACTGCCTG 218 Query 87789 AAGCCCGGTA-TCGACAAAGTGGAGATTGCTCCTTTTGCGTACATGCGTGGCCGCAGTTT 87847 |||||| | ||| ||| || |||||||| || || || || ||||| || |||| || Sbjct 219 C-GCCCGGAAATCGGCAAGGTAGAGATTGCGCCGTTCGCTTATATGCGCGGACGCACCTT 277 Query 87848 CGAAAATGCGGTTGTCATTTTAGATGAAGCTCAGAACACTACTGCTCAG-CAGATGAAGC 87906 |||||||||||| || || | |||||||| |||||| || || ||| |||||||| Sbjct 278 CGAAAATGCGGTCGTTATCCTGGATGAAGCCCAGAACGTGACCGC-CAGCCAGATGAAAA 336 Query 87907 TCTTCCTGACACGTATCGGGGAGAACTGTATCGTTATCGTAAACGGTGACGTCACACAGT 87966 | |||||||| || | ||||| ||| | |||||||| ||||| ||||| || |||| Sbjct 337 TGTTCCTGACCCGCCTGGGGGAAAACGTGACGGTTATCGTTAACGGCGACGTGACCCAGT 396 Query 87967 GCGACTTGCCCAAAGGGGTGAAGTCTGGACTGGCCGACGCGTTGACCCGTTTCGAGGAAG 88026 ||||| |||| || ||||| || || || ||| || || || ||||| || | Sbjct 397 GCGACCTGCCGCGCGGCGTGAAATCCGGGCTCAGCGATGCCCTGGAGCGCTTCGAAGAGG 456 Query 88027 ACGA 88030 |||| Sbjct 457 ACGA 460 >SEQ36764 Length=622 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 99589 TGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCG 99648 |||| || |||||||| ||||| || || ||| ||||| | || |||||||| ||||||| Sbjct 419 TGTCCTGCCAGCTCTACCAGCGCAGCGCGGACATGTTCCTCGGCGTGCCGTTCAACATCG 360 Query 99649 CGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGCGATT 99708 | || || || || | || |||||||| || ||||||||| ||| ||| ||||| | Sbjct 359 CCTCCTACGCGCTGCGGACCCACATGTTCGCCCAGCAGGCGGGCCTGGAGGTCGGCGAGT 300 Query 99709 TCGTCTGGACCGGCGGTGA 99727 ||| ||||||||||| || Sbjct 299 GCGTGTGGACCGGCGGCGA 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716223793254200