Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021535.1 Length=50679 Score E Sequences producing significant alignments: (Bits) Value seq963 131 5e-26 SEQ25496 84.2 7e-12 >seq963 Length=26998 Score = 131 bits (144), Expect = 5e-26 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 18197 TCCTAGTCGACTCCGGTAAGGCGCTGGTGCAGGGCTTCATCAACGGCATCAAGTCGATGG 18256 |||| |||||||| || ||||| ||| | |||||||||||||||||||||||| ||||| Sbjct 16420 TCCTCGTCGACTCGGGCAAGGCACTGATTCAGGGCTTCATCAACGGCATCAAGGCGATGT 16479 Query 18257 TGGGAGCTGTGGCCGACGCCGCTTCGGCGG--TCGTCTCGGCGGCACGCGACTTCTTCCC 18314 | || ||| | |||| | ||||||| | ||||| || || | |||||||| Sbjct 16480 TCGGCAAGGTGACGGACGTGG--TCGGCGGGCTGGTCTCCAAGGTGCGTGGTTTCTTCCC 16537 Query 18315 GTTCTCCCCGGCGAAGAAGGGTCCGTTCTCGGGCTCTGGCTGGGTGGACGAGTCGGGTCG 18374 |||||||||||||||| | || | ||||| ||| ||||||||| | || || || Sbjct 16538 GTTCTCCCCGGCGAAGTACGGCGCATTCTCCGGCCACGGCTGGGTGCTGTACTCCGGCCG 16597 Query 18375 CTCCGTTGGTGAAGCGTTCGCCGATGGCCTCGCGG 18409 || | ||||| |||||||| | ||| ||| || Sbjct 16598 GTCGATCGGTGAGGCGTTCGCGCAGGGCATCGAGG 16632 >SEQ25496 Length=2929 Score = 84.2 bits (92), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 4025 CGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGTCCTG 4084 ||| |||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||| Sbjct 403 CGTGGCTCAATTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 461 Query 4085 CCGTGTCTG---CACCCACCCAGTTCC 4108 || ||| ||||| ||| ||||| Sbjct 462 TCGCCCCTGCAACACCCTCCCTGTTCC 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161962477474410