Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value SEQ25261 150 2e-30 SEQ41001 145 9e-29 SEQ11799 104 3e-16 seq61 98.7 1e-14 seq5601 96.9 4e-14 seq5367 93.3 5e-13 SEQ45565 91.5 2e-12 >SEQ25261 Length=2245 Score = 150 bits (166), Expect = 2e-30 Identities = 311/462 (67%), Gaps = 17/462 (4%) Strand=Plus/Plus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 96713 |||||||||||||||||||||||||| || ||| ||||||| || | | || | | Sbjct 860 GCCGAGAACCTCATGATCGTCGACCTCGTCCGCCACGACCTCGGCCGGGTCGCCGAGGAC 919 Query 96714 GGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCAC 96773 || | ||| || || | |||| | | ||| |||| ||| || | ||| Sbjct 920 GGGACCGTGCAGGTACC------CGACCTGTTCGGGATCGAGAGCTATGCGACGACCCAC 973 Query 96774 CAGATGGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGGACGGCGCTCGACCTCGTG 96833 |||||||| | ||||||| || || |||| || | ||| || | | | || ||| Sbjct 974 CAGATGGTCAGCACCGTCACCGCCCGCCTCGCCCCGGACCGCACCGGGGTGGATGCGGTG 1033 Query 96834 CGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCATGGAGATT 96893 || ||||||| ||||| || |||||||| || ||||| |||| || | | || ||| Sbjct 1034 CGGTCGGCCTTCCCGCCCGGATCGATGACCGGGGCGCCGAAGGAACGGACCGTGCGGATC 1093 Query 96894 CTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCGCGCTGGGCtttttt 96953 |||| || | | || |||| |||||||| | ||| || ||||| |||| || Sbjct 1094 CTCG---GCATGCTGGAGGACCGGCCGCGCGGCGTGTACAGCGGGGCGCTCGGCTACTTC 1150 Query 96954 tCGGCCGACGGCGCCTGCAGCCTGTCGGTGGTGATCCGCACGGCCGTCATCGACG----C 97009 || |||||| ||| | |||||| || || ||||||||| |||| |||| | | Sbjct 1151 TCCCTCGACGGTGCCGTCGACCTGTCCGTCGTCATCCGCACGCTCGTCGTCGAGGACACC 1210 Query 97010 GGACGGCTCGGCGTCGGTGGGCTGCGGCGGCGCCATCGTCGCCGACTCGGACCCCGACGC 97069 || ||| || || ||| | | || || || | |||||| | || || || ||||| Sbjct 1211 GGGCGGATCAGCTACGGCGTG----GGAGGGGCGGTGGTCGCCCAGTCCGATCCGGACGC 1266 Query 97070 CGAGTTTGCCGAGATTGTGCTCAAGGCCGATCGCCTGGTGCG 97111 ||| | | ||||| || ||||||||| | ||| |||| Sbjct 1267 CGAATACGACGAGACCGTCGTCAAGGCCGCGCCGCTGCTGCG 1308 >SEQ41001 Length=2622 Score = 145 bits (160), Expect = 9e-29 Identities = 149/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCG--ACGTCGAGCAGCC 1592163 ||||||| ||||| |||||| | ||||||| | || ||| | | || || ||| Sbjct 911 AGAAGCGAACCGATGACATCACATCGTGGGAT--GCAGATTTCCTTAAAGTGGATCAGGG 854 Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| || ||||| |||||| | || |||||||| | ||||||||| |||| || || Sbjct 853 CACTCTATTTGAATTGATCTTGGCTGCCAACTATTTGGACATCAAGGGATTGCTGGAGCT 794 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 ||||||| |||||||||||||||||||||||||| | || ||||| || |||||||| Sbjct 793 AACGTGCAAGACTGTGGCCAACATGATCAAGGGCAAGACTCCGGAGGATATACGCAAGAC 734 Query 1592284 CTTTAACATCAAG 1592296 |||||||||||| Sbjct 733 ATTTAACATCAAG 721 >SEQ11799 Length=6542 Score = 104 bits (114), Expect = 3e-16 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 || || ||||||||||| || ||||||| | ||||| ||||| ||||||| ||| Sbjct 4424 CCAGTTGAGCCAAAGCCACCCTCGCCGCGCACTGTGTCCTCCAGTTTGTCGACCTGCTCC 4365 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 ||||||| | | || |||| | || ||||| ||||| | | | || || Sbjct 4364 AGCTCGGGATAGAAGATGCGTTCGCAAATGAATTGGGCAATGCGATCACCACGCTTCACC 4305 Query 1572500 ACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCA 1572559 || ||||| |||| ||| ||||| || || || || | | |||||||||||| || Sbjct 4304 TCGAAATCGGCATCGGAGTGATTGAACAGTACAACACCTAGATTGCCGCGATAGTCCTCA 4245 Query 1572560 TCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCC 1572616 || | ||||| || || |||||||| | | | || |||| | ||||| |||||| Sbjct 4244 TCTACAACGCCGGCTCCCACGTCGATGAAGTTCTTCACAGCCAAGCCAGAGCGTGGCGCC 4185 Query 1572617 ACGCGCCCATAGTAGCCC 1572634 || || ||||| ||||| Sbjct 4184 ACACGGCCATAAGAGCCC 4167 >seq61 Length=55249 Score = 98.7 bits (108), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 ||||| || |||||||| || || || | || | || |||||| || || || Sbjct 26805 GGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATC 26746 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 |||| ||||| ||||| || || || | || ||| |||||||| ||||||||||||| Sbjct 26745 CACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGG 26686 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || | | || | || |||| ||||| || |||||||| |||||| ||||| Sbjct 26685 TCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGT 26626 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 26625 CGCTTGCCGCCACC 26612 >seq5601 Length=8218 Score = 96.9 bits (106), Expect = 4e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 507077 TCGGGCAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGC 507136 |||||||| ||| ||||| || || ||| ||||||||||||||||| | || || Sbjct 410 TCGGGCAAACCCCTCAAGGCGATCAAGGCGCGTCTCAAGGGCAAGGAGGGTCGCATTCGT 351 Query 507137 GGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCC 507196 || |||| |||||||| || ||| |||| |||| || | ||||||| ||||| ||| Sbjct 350 GGTAATTTGATGGGCAAACGTGTCGACTTCTCCGCACGTACTGTCATCACACCCGATCCC 291 Query 507197 GAGATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCC 507256 | | || || ||||||||||||| | || | | | |||||||| ||| Sbjct 290 AATTTGCGTATCGATCAGGTGGGCGTGCCGCGTTCCATAGCACAAAATCTCACCTTCCCC 231 Query 507257 GAGCGCGTGACGCCCCTTACCAT 507279 |||| || |||||| | | ||| Sbjct 230 GAGCTGGTTACGCCCTTCAACAT 208 >seq5367 Length=16073 Score = 93.3 bits (102), Expect = 5e-13 Identities = 189/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 1852371 ACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGG 1852429 ||||||| ||| |||| ||||||| || | |||| ||||| || ||| ||| Sbjct 487 ACTGGTAGTCGCTGCCCTTGACAAACTTCAGCTTGTCCAGGGGCACTCCAATGGAGCTCA 428 Query 1852430 AGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGC 1852489 | || ||| ||||| | |||||| | | || | || | ||| ||| || Sbjct 427 A-CAAGGCTTTGATCACCTGCTCGTAATACTGTGTGCGCAGCTCCAACAGCGACCATGGT 369 Query 1852490 GTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCG 1852549 | ||| ||| || || | ||| |||| |||||||| || || | ||| |||||| Sbjct 368 GCCTTCATGTTATCCAGATAGGCATGCAGATCGGCAAACAGAATGGTCACCTCACAGCCA 309 Query 1852550 GCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCC 1852609 |||| ||| |||||||| | ||| | ||||||||||||||| | | || || ||||| Sbjct 308 GCCTTGAGGAAGTCGGCAATCTTGGACATGGGCACAAAGTAGGCGACATGTGGTTTGCCT 249 Query 1852610 GTCGGCGCCGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 || | || |||||||| || || |||| |||||| Sbjct 248 GTTGTTGCTGTGCCCCAGTAGATTTTCAGATCGCGCTC 211 >SEQ45565 Length=619 Score = 91.5 bits (100), Expect = 2e-12 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGA-TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTG 1726791 |||||||||||||| |||||||||| || ||| | || ||||| ||||| || ||||| Sbjct 27 CCGTCGGTGCCGTTTTTGAAGCCGACCGGGCAG-GAGAGCGCCGAGGCCATTTCACGGTG 85 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCA 1726830 | |||||| ||||| |||||||| || | ||||||||| Sbjct 86 GATCTGGCTTTCGGTGGTGCGCGCACCGATGGCGCCCCA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103355607790285