Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq133 105 5e-17 seq2972 102 6e-16 >seq133 Length=17367 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| || || || || ||||||||| | || || || | || | ||||||||||||| Sbjct 13958 TGATTCTTTGCGGCGTCGCCAATCAGACGCTCAGTTTCGTTGAAGGCAACATATGATGGA 13899 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 ||||||||||| || ||||| || || || || || ||||| || ||||| ||||| Sbjct 13898 GTTGTGCGATTGCCCTGATCGTTGGCTATGATCTCCACTTTGTTGTTCTGCCAGACACCC 13839 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||||| | | ||||| || | ||| || |||||||| Sbjct 13838 ACACAGGAATATGTTGTGCCCAGATCGATGCCAATAGC 13801 Score = 93.3 bits (102), Expect = 3e-13 Identities = 201/299 (67%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| ||||| || || || |||| | |||| || | || || | || Sbjct 14773 ACAAGACGATTGTCAAAGTCCTCGCCACCCAGATGTGTATCGCCGGCTGTGGCCTTCACC 14714 Query 282242 TGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 | ||| || || || |||| | | | | |||||| ||| || ||||||| | Sbjct 14713 TCGAACAGCGAGCCCTCGTCAATGGTGAGTATGGACACATCAAAGGTGCCGCCACCCAAA 14654 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTT---GGTTTTTATCAAGACCATACGCAAAA 282355 || || || | ||||| || | ||| | || || || || ||||| || ||| Sbjct 14653 TCGAAGATCAACACATTGCGCTC---GCCTTTCAGATTCTTGTCGAGGCCATAGGCCAAA 14597 Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 || || || || || ||||| ||||| | | ||||| || |||||||| ||| ||| Sbjct 14596 GCTGCTGCTGTGGGCTCATTGATAATGCGTAGCACATTTAGTCCAGCAATGGATCCGGCA 14537 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 ||||| || || || | || || || || ||||| || || || || || |||||||| Sbjct 14536 TCTTTGGTTGCCTGACGCTGCGAGTCATTGAAATAAGCTGGCACTGTGATGACGGCATC 14478 >seq2972 Length=6305 Score = 102 bits (112), Expect = 6e-16 Identities = 206/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 ||||| || || || ||| ||||||| | ||| ||||| ||||| | |||||||| || Sbjct 343 GTTGACTTCTCCGCTGCACTCACATTCAAAATGCCATTCGCATCAATGTCAAATGTAACC 284 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || ||||| || || || | | |||| || || || | ||| | |||| | |||| | Sbjct 283 TCGATTTGGGGCACGCCACGCGGAGCCGGCGGAATGGCGGACAACTCAAATTTACCCAAA 224 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 |||| ||||| || || | ||||||||||| || | ||||| || | | Sbjct 223 ATATTGTTATCCTTGGTCATAGCACGTTCACCCTCAAACACCTGGATGAGCACACCGGGC 164 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 281649 |||||||| | ||| || ||||| | |||| | | || || || || | ||| | Sbjct 163 TGATTATCGGCATACGTGGTAAAGA-TCTGCGTCTGCTTGGTGGGTATGGTCGAGTTACG 105 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 | ||| | | ||||| | ||| |||||||| || | || || || || ||||| || Sbjct 104 TTTAATCAGCGTTGTCATCACACCGCCAGCTGTCTCAATGCCCAGCGACAGTGGAGTCAC 45 Query 281710 ATC 281712 ||| Sbjct 44 ATC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738366839339730