Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_023692.1 Length=48984 Score E Sequences producing significant alignments: (Bits) Value SEQ30131 266 1e-66 SEQ29893 93.3 1e-14 SEQ27525 91.5 5e-14 >SEQ30131 Length=2206 Score = 266 bits (294), Expect = 1e-66 Identities = 311/420 (74%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 41441 AGATGCGTATCAGGTCAACGAAACCCGAGTTCTGGCGCTCGGAGCGGATCGCCTCGGTTT 41500 || || | ||||| || ||||| || ||||||||| | ||| || ||| || | || Sbjct 1685 AGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCTGTCG 1744 Query 41501 CGTGGGATGCGCGCCTGGTGCTCAAGGGGCTCGAGTCCTACGTCGACGACAACGGCGTCG 41560 ||||||||||| ||||| |||||||| || ||| ||| ||||| ||||| || || | Sbjct 1745 ACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGTGTGG 1804 Query 41561 GCAAGGATGACATCGCGTTGATCGTCGGCGACGTGTTCCCTCGCGACATGCTCGCGAACC 41620 || ||||||||| || |||||||| || |||||| ||||||| |||||| | Sbjct 1805 GCCGGGATGACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCATTTCGCGAGGC 1864 Query 41621 CTCGCGAGACTTACGCGAGGGTGTCCGAAGCTATTTCCGAGCTCCACCAGGCCGGTTTGT 41680 ||||||||||| |||||||||||||||||| |||||| |||| | |||||| | Sbjct 1865 CTCGCGAGACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGTCTCC 1924 Query 41681 TGTGGCGCTACGAGTCCGACGGCACCCGCCTGCTGTTCGTTTCGTGGTGGGAGGACATTC 41740 | ||| | |||||| |||| || | || | | | ||||| ||||| | | | Sbjct 1925 TATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGCCTCC 1984 Query 41741 AGCGCATCGACAAACCGGGCAAGGGGCGTTTCCGCAGGCCAGACGGCACAACGAACTATC 41800 | || |||||||| || ||| || ||||||| ||||||||||||||||| |||||| Sbjct 1985 AACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAACTACA 2044 Query 41801 GCGACTCGGAAATTCGCGAGAGTGTCGCGAGCCCTCGCGAGACCGTCGCGCCTGGAACAG 41860 || || |||||||||||||||||||| || ||| ||||||||||||||||||| Sbjct 2045 AGGAATCAACGATTCGCGAGAGTGTCGCGAGGGTTCCCGAAACCGTCGCGCCTGGAACAG 2104 >SEQ29893 Length=4967 Score = 93.3 bits (102), Expect = 1e-14 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 13548 ATTGCGCAGGGCGAATCTGGGGGCAACTGGCAGACCAACACCGGTAACGGGTTCTACGGC 13607 || || ||| |||| || ||||||||| | ||||||||| ||||| ||| | ||| Sbjct 2007 ATCGCCCAGTGCGAGTCCACCGGCAACTGGGCCATCAACACCGGCAACGGTTTCAAGGGC 1948 Query 13608 GGGCTGCAATTCACGCCGTCGAGCTGG-CAGGCCGCAGGCGGCACACAGTACGCGCCGAG 13666 || || || ||||| |||| |||| | ||| | |||||||| ||||||| ||||| Sbjct 1947 GGCCTCCAGTTCACCGACTCGACCTGGGCCGGCTTC-GGCGGCACCGAGTACGCCCCGAG 1889 Query 13667 CGCCGAGCAGGCGACGCCGT-ATCAGCAG-GCGCTCACCGCCGAGCAGCTGCTCGCGCAG 13724 |||||| ||||| || |||| | |||||| ||| | ||||||| || | | ||| Sbjct 1888 CGCCGACCAGGCCAC-CCGTGAGCAGCAGATCGC-CGTCGCCGAGAAGGTCCAGGCGGCC 1831 Query 13725 CAGGGTCCGGGCGCGTGGCCG 13745 ||||| ||| || |||||| Sbjct 1830 CAGGGCTGGGGAGCCTGGCCG 1810 >SEQ27525 Length=13899 Score = 91.5 bits (100), Expect = 5e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 48427 TCGTGACCGGACCGCCCGCCAGCGGCAAGACCACCTACGTACGGCAGCACGCCAAACCCG 48486 |||||| ||| || |||||| || |||| ||||||| | ||| ||||| ||||||| Sbjct 13367 TCGTGATCGGCCCTCCCGCCGCAGGGAAGAGCACCTACATCCGGGAGCACCGGAAACCCG 13308 Query 48487 GCGACCTCACGATCGATTACGACGCGCTCGCCAGCGCGCT 48526 ||||| |||| ||||| ||||||| |||||||| ||| || Sbjct 13307 GCGACATCACCATCGACTACGACGTGCTCGCCAACGCCCT 13268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156541447097460