Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_023727.1 Length=68494 Score E Sequences producing significant alignments: (Bits) Value seq963 140 1e-28 seq2825 127 9e-25 >seq963 Length=26998 Score = 140 bits (154), Expect = 1e-28 Identities = 184/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 40479 CGATTTCGCCGCCAAGGACGGCACACCGATCTACGCG-GCCCAGGGCGGCACCGTGGCCT 40537 ||| ||||||||| |||||||| || ||||||| || | ||| ||||| || || Sbjct 21950 CGACTTCGCCGCCGCCGACGGCACCCCCTTCTACGCCTGCGCCGGG-GGCACAGTCCTCT 22008 Query 40538 ACATCGGCAGAGCCGACGGTTTCGGGCAATGGATCGTGATCGACCACCNNNNNNNNNNNN 40597 |||||||| ||| ||| | ||| || ||||| || ||||||||| Sbjct 22009 ACATCGGCCCCGCCAGCGGCTACGGTCAGTGGATTGTCCTCGACCACCCGGACAGTGAGG 22068 Query 40598 NTGGCGGCACGACCGTCTACGGACACATGTGGGACGCGTTCGCCACCGGACTACGTCAAG 40657 |||||| ||||| ||||| || ||||||||||| | ||| || || || | || | Sbjct 22069 GCGGCGGCGTGACCGAGTACGGCCATATGTGGGACGCCTACGCGACTGGCCTGCAGCAGG 22128 Query 40658 GGCAGCGCGTCGAGGCCGGGCAGCTCATCGCCTACGTCGGCACGAACGGTCAATCGACCG 40717 ||||| | || || || || |||||||||| ||||||||| |||| ||||| |||||| Sbjct 22129 GGCAGTGGGTTGATGCAGGACAGCTCATCGGCTACGTCGGGTCGAATGGTCAGGCGACCG 22188 Query 40718 GCCCACATCTGCACTTC 40734 |||| || || ||| || Sbjct 22189 GCCCGCACCTTCACCTC 22205 >seq2825 Length=19190 Score = 127 bits (140), Expect = 9e-25 Identities = 282/418 (67%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 45983 GGTGGGCCGAGCCAGCACAACGCAGTCGCACATCGGGAAATCGGCACCCTCGGTGAGCAC 46042 ||| || || |||||||| || ||||| || ||||| || || |||||||||||||| Sbjct 6612 GGTAGGACGTGCCAGCACGACACAGTCACAGCGGGGGAAGTCCGCGCCCTCGGTGAGCAC 6553 Query 46043 CTGCACAGTGACCAGTGCCTTGGCGGTGCCATTGCGGTACGCCTCGTATACGGGCTGGCG 46102 |||||||||||||| ||| | ||| ||||| || ||| | ||| || Sbjct 6552 CTGCACAGTGACCATGGCCCGGATTTCGCCGCTGCGGAACTGGCGGTAGATTTCCTGCCG 6493 Query 46103 CTCGGCGTAGCTCATCGAGCCGGTGACGGCGACGGCG-GGGAAATCGGCG-GCGGTCAGT 46160 ||| || | ||| ||||| || |||| | | ||| | | ||| ||||| || Sbjct 6492 CTCCGCCTTGCTGTGGCTGCCGGACAC--CGACCGGGTGGGGTAGCCGCGCGCGGTGAGC 6435 Query 46161 GCGTCGGCGATGTGGTGGGCNNCGTCGACCGACGCGGCGAAGATGATCGGGCGGCGGTCG 46220 || |||| | | | | | ||||| ||| ||||||||||||||||| ||||||| Sbjct 6434 TCGGCGGCCAGCTCCTCGCCCTGCTCGACGGACACGGCGAAGATGATCGGGACGCGGTCG 6375 Query 46221 GCGGCGTGCAGCTTGATCGCGTCGACCACGTACTCGG--TGGCGGCTTCCATGACCTCGG 46278 |||||||| | | |||||||| || |||| | | ||| |||||||||| Sbjct 6374 GCGGCGTGGCGGAGCACGGCGTCGAC--GGTGGTCGGGATCGAGGCACGCATGACCTCGT 6317 Query 46279 CGAGGTCGGACTGCTGAAAGTCACCGGCGACGGTGCGTACGTCATCGAGGGCGTTGAGGT 46338 | ||||||||||| | |||| ||| |||| || | ||||| ||| |||| Sbjct 6316 CCAGGTCGGACTGTTTGTAGTCTCCGCCGACCGTCTTGATCCGGGCGAGGAGGTTCAGGT 6257 Query 46339 TATTGATGCGGACGGTCAGACCGCGCGGGCGCACGAGGTAGCCAGAGTCGATGGCCCA 46396 | | || |||||||| ||||| || | |||||| | || |||||| ||||| Sbjct 6256 GCTCGGTGACCACGGTCAGCCCGCGGGGCGGGACGAGGAACCCGTTGTCGATCGCCCA 6199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218932911406775