Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 147 2e-30 SEQ32872 127 2e-24 SEQ26880 120 3e-22 >SEQ29447 Length=7397 Score = 147 bits (162), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 76552 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGC 76611 |||||||||| ||||||||| |||||||||||||||| |||||||||||| || || ||| Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 76612 GACCATGACTCGGTCGGCCTGTTCCAGCAGCGTCCGTCC---TGGGGCACGGTGGCCCAG 76668 |||||||| || |||| |||||||||||||||| | || |||||||| || || ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 76669 CGGATGAACCCGCGCGA 76685 || ||| | |||| ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ32872 Length=2637 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 114467 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTC 114526 ||||||||||||||||||||||| ||| | || ||| |||||| || |||||| Sbjct 191 CGGCCCGGGCCGTGGCTCCGCCGCCGGCGCCCTGGTCGCCTACGCACTGACGATCACCAA 250 Query 114527 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 114586 |||||||| ||| || ||| |||||||||||||| || |||||||||| |||||| Sbjct 251 CATCGACCCCATCGAGCACGGGCTGATGTTCGAGCGATTCCTCAACCCGGAACGCCCCTC 310 Query 114587 CTTCCCCGACATCGACGTCGACTTC 114611 | |||||| |||||| |||||||| Sbjct 311 CGCCCCCGATATCGACATCGACTTC 335 >SEQ26880 Length=5820 Score = 120 bits (132), Expect = 3e-22 Identities = 229/337 (68%), Gaps = 24/337 (7%) Strand=Plus/Minus Query 142931 AGGGCATTGTCATCGCGCTCGCCGTCGCCCTGGTCGAGACCAACCTCAAGATGTACGCCA 142990 |||||||| ||||| |||||| ||| ||||| ||| | | | ||||||||||||| Sbjct 1561 AGGGCATTAAAATCGCCCTCGCCACCGCACTGGTGGAGTCAGGCATGAAGATGTACGCCA 1502 Query 142991 ATCGGTCGGACCCGGAGAGCCTCAACTTCCCGCACGACGCGGTCGGCAGCGACGCCAACA 143050 | | | ||| || ||| | | |||||||| ||||| ||||||||| ||||||| || Sbjct 1501 ACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGCGACGCGGACT 1442 Query 143051 GCGTCGGCGTCTTCCAGCAGCGCG---CTCCCTGGTGGGGCACGGTCGCCGATCGCATGG 143107 |||||| | ||||||||||||| | | ||||||||| ||| || ||||||| Sbjct 1441 CGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAAGACCGCATGG 1382 Query 143108 ACGTCGCGCGCAGCGCGGCGATGTTCTACAACAGCCTGTATCGCCAGCGCGTCGGCGGCG 143167 || | ||| ||| | ||||||||| || || | ||| || || Sbjct 1381 ACCCTGAGCGGTCCGCCGGAATGTTCTACGAC-----GT----------CCTCGACGACG 1337 Query 143168 CCGACTACAACACCGATCGGGTCTCTCCCGGCACCTGGGGCCAGATGGTCCAGCAGTCCG 143227 | ||||||||||||| | | | || ||| || | ||| || |||| ||| | Sbjct 1336 CGGACTACAACACCG---GCGAC---CCGGGCGCCCACGCGCAGCGCGTGCAGCGGTCAG 1283 Query 143228 CCTTTCCGGATCGCTACGACAAACGCATGGCCGAGGC 143264 | ||||| || |||||| ||| |||| |||||| Sbjct 1282 CATTTCCCGACCGCTACAACACGAAGATGGGCGAGGC 1246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 76552 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGC 76611 |||||||||||| |||||||| ||||| |||||||||| ||||| || | ||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 76612 GACCATGACTCGGTCGGCCTGTTCCAGCAGCG 76643 ||| |||||||||||||| ||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494220610241400