Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value SEQ17778 161 2e-34 SEQ10860 149 1e-30 seq4710 147 4e-30 seq4983 134 3e-26 SEQ24830 98.7 2e-15 >SEQ17778 Length=11298 Score = 161 bits (178), Expect = 2e-34 Identities = 222/307 (72%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 198331 ATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTT 198390 ||||| || ||||| | ||||| | ||| || | | || || ||||||||| | | Sbjct 3956 ATGACGACCTTTGGAACTCGGCGCAATTGCAGCTGGTCAATGAGGGCAAAATGCATGGAT 4015 Query 198391 TTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGA--AGACGC 198448 || | |||||||| ||||| || |||||||||||||||||| |||||| || || ||| Sbjct 4016 TTCTGAGAATGTATTGGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGC 4075 Query 198449 TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGG 198508 | ||| ||||| || | || ||| | || ||| || || ||| ||||| ||||| Sbjct 4076 -TGGAG-TATAGCATATTGCTGAACGACAAATACAGTCTGGATGGCCGCGATCCCAACGG 4133 Query 198509 ATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACC 198568 || || || || ||||||||| | | || | |||||| || ||||| || | | Sbjct 4134 TTATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGC 4193 Query 198569 TATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGC 198628 |||||| || ||||| | |||||||| ||| |||| | ||| ||||||||||||| Sbjct 4194 TATATTCGGCAAGATTCGCTATATGAACTATCAGGGATGTAAACGAAAATTTGATGTTAA 4253 Query 198629 TGCATTT 198635 ||||||| Sbjct 4254 TGCATTT 4260 >SEQ10860 Length=7223 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| ||||| ||||| || ||||| ||||| || ||| | | || Sbjct 1466 CGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCA 1525 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || || |||||||| | | |||||||||||||| |||||||| || Sbjct 1526 TCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTG 1585 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| ||||||||||| ||||| ||||| || || | ||| || Sbjct 1586 TCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATG 1645 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || || ||||| Sbjct 1646 GTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq4710 Length=78879 Score = 147 bits (162), Expect = 4e-30 Identities = 172/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCA-GAGTAGATTCTTTCTGTATATTATAATCA 82640 |||| || | || |||||| || ||||||| | || || || ||||| || || || || Sbjct 8601 TACCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCT 8660 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || ||| | | ||| || || || || || ||||| ||||| || | || |||||||| Sbjct 8661 GACAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGG 8720 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || ||||||||||| ||||| ||||| || || ||||| ||||| |||||| || || Sbjct 8721 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCC 8780 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||| || || ||||| || |||| ||||| || || || |||||| Sbjct 8781 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATT 8831 >seq4983 Length=3163 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || || ||||| || || || || || Sbjct 644 CCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 703 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| | || ||||| || ||||| | | || |||||||| || Sbjct 704 AGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 763 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || |||||| || || || Sbjct 764 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACC 823 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| ||||| ||||||||||| |||||||| Sbjct 824 TCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870 >SEQ24830 Length=1296 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || ||||| ||||| ||||| ||| || || Sbjct 1066 ATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTATCGGAAGGCTCAACC 1007 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1006 TCCAGGGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981247214729595