Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq61 309 3e-79 seq4710 127 2e-24 seq4005 105 6e-18 >seq61 Length=55249 Score = 309 bits (342), Expect = 3e-79 Identities = 1192/1847 (65%), Gaps = 58/1847 (3%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCG--CCATGCG 147995 |||||| || | ||||||||||| ||||| || ||||||||||| ||| ||| | | Sbjct 27982 GGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCC--TGCCTTCCACGAG 27925 Query 147996 TAGTCGTGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCA-CAAACAGATTAAA 148051 || || | || | | | | || || || |||| ||||| | | || || Sbjct 27924 AAGAAATGAATGGATG---TTAACTTGCCGTA-GTTGGGTTCGGCAACGTGAATGTTGAA 27869 Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 || || ||||||||||| || || || || ||||| ||||| | ||| | ||| | Sbjct 27868 TGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCAC 27809 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | || |||||| | || ||||| || | | | | |||||| |||||| Sbjct 27808 CGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTT 27749 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 || | ||||| || |||| || ||||| ||| || || ||| | || Sbjct 27748 TTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCTAG 27689 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 ||| | | || | || || ||||| ||||| | ||||| |||| | ||||| Sbjct 27688 TTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCG 27629 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | ||| ||| |||| ||||| ||||| || || |||| ||||| || Sbjct 27628 CCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGC 27569 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 || | |||||||||||| ||||| ||||||||||| | | || | | ||| || Sbjct 27568 AGTAGATGCCGTGGGCATTGGAGCTACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGAT 27509 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 ||| || ||||| | ||| ||||| || | |||||| || |||||| ||||| Sbjct 27508 TTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTA 27449 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||||||||| || ||| | || | || |||| | || || |||| | Sbjct 27448 CTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTG 27389 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 ||||| || || || ||||| || || || ||||| || || ||| || ||| || Sbjct 27388 AGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATT 27329 Query 148592 GAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAG 148651 ||||| | || || || || || || | ||||| | | | || |||||||||| Sbjct 27328 GAGCAATACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAA 27269 Query 148652 GCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-A 148710 |||||| ||||| | ||||||||| || ||| | | ||||| || ||| | | Sbjct 27268 GCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGC-CTCGGGCA 27210 Query 148711 GCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTC 148770 ||||||||| ||| || ||||| |||| | ||| | || || |||| | Sbjct 27209 GCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTT 27150 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG-------CATCGGTTCACGGCG 148823 ||| | |||||| | ||| ||| || | ||| |||| ||| Sbjct 27149 CCTTCAGTTTCTTGAAATCGAA--TGTTTTCTCTGAAGTCACAAACAT--ATTCAAGGCT 27094 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || || || | |||||| ||||| ||||||| || || || || || || || | | Sbjct 27093 ATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTG 27034 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || || |||||||||||||| ||| || |||| ||||||||||| |||||||| | | Sbjct 27033 CAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAG 26974 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGA 149000 |||||| | ||||||||||| |||||| || || || | ||| || ||| ||| | Sbjct 26973 TCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAA 26914 Query 149001 TGCAG---GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | || || || | ||| ||| ||||||||| |||||| ||| Sbjct 26913 AG-AGTTTGTGCTTTAATCACACGATTTGC-----GCGACCCTCGCTCTCGTACTTTGTA 26860 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 |||||| ||| || | || || | || || | ||||| |||||||| || ||| Sbjct 26859 TACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACAC 26800 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 | |||||||| | | | || | ||| |||||||||||||||||||| | ||| | Sbjct 26799 AACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAG 26740 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAG 149236 ||||| | ||| || || || || ||||| |||| |||| |||| || Sbjct 26739 GCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAG 26680 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT 149296 || | || || || | ||||| || || | ||| | || | ||||| ||||| Sbjct 26679 AACTC-AAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTT 26621 Query 149297 GCCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 |||| || || ||||| | || ||| || |||||||||| | ||| || | | Sbjct 26620 GCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAA 26561 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCA 149412 ||| | | |||||| ||||| | || ||| |||| || || | |||| Sbjct 26560 ACCATTTGAAGTGCCATTAGTGCCACAGAT-CGAGGTGCCCTTGGCACGAATACAATGCA 26502 Query 149413 CGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGT 149472 | |||| || ||||| || || | || ||||| || || | ||| | | | Sbjct 26501 CATTGAGCCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGA 26442 Query 149473 AGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAA 149532 | ||||| |||||| ||| ||| || | || || ||||| |||| || ||| Sbjct 26441 AAATGCCTTCGATGGAATCGGAAACCATTGTTAAAAGGAAACACGATGACATCTGGGGAC 26382 Query 149533 AACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA--TTTCTGGCTCAT 149590 | ||| | || || || | || || || || |||||||| ||| | | Sbjct 26381 GATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTAAAATAGCGTTCCG--ATAA 26324 Query 149591 CATCTCGTACGACTCGAGCACGCGG--TCCATGTCATCGCCATGGATGCCTATGGCGACG 149648 || | ||| | ||||| || |||| || ||||| ||||||||||| || || || || Sbjct 26323 CAGATTGTAAGTCTCGA-CA-GCGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACT 26266 Query 149649 CGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAG 149705 | ||||||||| |||||||| || || || | |||| ||| || || ||||| || Sbjct 26265 CTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTG---CCATTGATCTTTAGCAAATAC 26209 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || || |||||| ||||||| || |||||| |||| || || Sbjct 26208 GAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACG 26162 >seq4710 Length=78879 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || || ||| ||| | ||||| |||||||||| Sbjct 8633 GGTCGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGACCA-TCCTCCAGCTGCTTGC 8691 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || || ||||| ||||||||||| |||||| || Sbjct 8692 CAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCCT 8751 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || | |||||||| || | ||||| ||| || || ||||| | Sbjct 8752 TCACATTCTCAATGGTATCAGATGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGG 8811 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 8812 TCTTCACGAAGATTTGCAT 8830 >seq4005 Length=24450 Score = 105 bits (116), Expect = 6e-18 Identities = 233/346 (67%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 116458 CTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGC 116517 ||| ||| || ||||| || ||||||||||| ||||||||||||| || |||||| ||| Sbjct 15213 CTGGCGCAAGGTCTGCATGGATTCCACGTGCATGAGTTTGGCGACAACACCAACGGATGC 15272 Query 116518 ACCTCCGCCGGCGAACACTTCAACCC-CACCGGCCAGGACCACGGCGCGCCCAACGCCGC 116576 | || | || || |||||||| ||| | |||| ||||| || |||| | || Sbjct 15273 ATGTCATCAGGACCCCATTTCAACCCGCACAAG-AAGGAGCACGGTGCACCCACAGACGG 15331 Query 116577 CGTTCGTCACGTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGC 116636 | || ||| | || || |||||||||| ||||| | | ||| | |||||| Sbjct 15332 TGAGCGCCACTTGGGCGATTTGGGCAACATCACGGCCAGCG---GCGACGGTCCCACTGC 15388 Query 116637 CGTGGACAAGATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAG 116696 || || | | ||||| | ||| || || || |||||| ||||| | | || |||| Sbjct 15389 GGTCGATATCACCGACAGCCAGATAACTCTCTTTGGCGAGAACAGCATCATTGGACGCAC 15448 Query 116697 TCTCGTCGTGCACACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAAC 116756 | | || || || | | ||||| || || || ||| ||| | | ||||| || Sbjct 15449 TGTTGTGGTCCATGCGGATGCCGATGATCTTGGCAAGGGTGGCCACGAGTTGAGCAAGAC 15508 Query 116757 CACCGGCAACTCGGGCGGCCGCCTCGGCTGCGGCATTATCGGCATT 116802 || ||||| | |||| ||| | || ||||| | || || ||| Sbjct 15509 AACTGGCAATGCTGGCGCACGCATTGGTTGCGGTGTGATTGGTATT 15554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483142198550200