Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2872 105 2e-17 seq61 98.7 2e-15 >seq2872 Length=9359 Score = 105 bits (116), Expect = 2e-17 Identities = 280/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAG---GTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||| ||||||||| || ||||| ||| | ||||| | | ||||| ||| Sbjct 3420 GCTTTTGCTGCTGTTGAAGGCATCTTCTT--CAGTGGGAGCTTTGCATCC-ATCTTCTGG 3364 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||||||||| | ||||||||||| |||| ||||| |||| ||||| | ||| Sbjct 3363 CTGAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGAT 3304 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG-ATAAACTTGA 132042 |||| ||||| ||| ||||| | | || | | || ||||| || | | | Sbjct 3303 GAAGGTCTGCATTGTGACTTTGCGGTGCTTATGT-TCCAACATTTGGTGCAGCGGCCTAG 3245 Query 132043 T---GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTAT 132099 | ||| | ||| || | |||| || || || ||| ||| ||||||| | Sbjct 3244 TCGGGAACGCATCATT---GAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCT 3188 Query 132100 TACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACA 132158 || || || |||| ||| |||||||| ||||| || |||| ||| || || | Sbjct 3187 CACCGATGCGCTGCCCGTCAACTTGATTGGCATGAACTGTG-CTCTGATGTCCGAATATA 3129 Query 132159 TTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCC 132218 | || || || |||||||| || | | |||||| ||||||||| ||||| Sbjct 3128 TCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGAGTGGGCAAGATTTACAACACAA 3069 Query 132219 AAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 | || || | | | |||||| || || | || || ||||| ||||||||||| Sbjct 3068 AGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGA 3011 >seq61 Length=55249 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 110724 TATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| |||||||||| ||| || ||| | ||||| || || || ||||||||| Sbjct 26600 TATGTCGATCAAGGTGGCGGCAAGCGACCAGGCGCTTTTGCCATTTACCTGGAACCTTGG 26659 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAACAAAG 110839 ||||| ||||| ||||| ||||| | || || ||| | || || ||||| || || Sbjct 26660 CATTCCGATATCTTTGAGTTCTT-GGACCTCAAAAAGAACACGGGCAAGGAAGAGCACAG 26718 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||| |||||| | || || || ||||||| | ||| | || ||||| ||||| | | Sbjct 26719 AGCTCGTGATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATGAAGCGTGTGGAGGC 26778 Query 110900 AAATG-GCATGTGGTCTCTTATGTGTCCTCA 110929 |||| | || ||||| || |||||||||| Sbjct 26779 CAATGAGGAT-TGGTCGCTGTTGTGTCCTCA 26808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186111725571905