Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 105 2e-17
seq61 98.7 2e-15
>seq2872
Length=9359
Score = 105 bits (116), Expect = 2e-17
Identities = 280/418 (67%), Gaps = 16/418 (4%)
Strand=Plus/Minus
Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAG---GTGCTTTCTGTGCTATCTTTTGG 131923
||||||||| ||||||||| || ||||| ||| | ||||| | | ||||| |||
Sbjct 3420 GCTTTTGCTGCTGTTGAAGGCATCTTCTT--CAGTGGGAGCTTTGCATCC-ATCTTCTGG 3364
Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983
|| |||||||||||| | ||||||||||| |||| ||||| |||| ||||| | |||
Sbjct 3363 CTGAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGAT 3304
Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG-ATAAACTTGA 132042
|||| ||||| ||| ||||| | | || | | || ||||| || | | |
Sbjct 3303 GAAGGTCTGCATTGTGACTTTGCGGTGCTTATGT-TCCAACATTTGGTGCAGCGGCCTAG 3245
Query 132043 T---GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTAT 132099
| ||| | ||| || | |||| || || || ||| ||| ||||||| |
Sbjct 3244 TCGGGAACGCATCATT---GAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCT 3188
Query 132100 TACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACA 132158
|| || || |||| ||| |||||||| ||||| || |||| ||| || || |
Sbjct 3187 CACCGATGCGCTGCCCGTCAACTTGATTGGCATGAACTGTG-CTCTGATGTCCGAATATA 3129
Query 132159 TTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCC 132218
| || || || |||||||| || | | |||||| ||||||||| |||||
Sbjct 3128 TCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGAGTGGGCAAGATTTACAACACAA 3069
Query 132219 AAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276
| || || | | | |||||| || || | || || ||||| |||||||||||
Sbjct 3068 AGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGA 3011
>seq61
Length=55249
Score = 98.7 bits (108), Expect = 2e-15
Identities = 152/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 110724 TATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780
||||| |||||||||| ||| || ||| | ||||| || || || |||||||||
Sbjct 26600 TATGTCGATCAAGGTGGCGGCAAGCGACCAGGCGCTTTTGCCATTTACCTGGAACCTTGG 26659
Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAACAAAG 110839
||||| ||||| ||||| ||||| | || || ||| | || || ||||| || ||
Sbjct 26660 CATTCCGATATCTTTGAGTTCTT-GGACCTCAAAAAGAACACGGGCAAGGAAGAGCACAG 26718
Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899
||| |||||| | || || || ||||||| | ||| | || ||||| ||||| | |
Sbjct 26719 AGCTCGTGATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATGAAGCGTGTGGAGGC 26778
Query 110900 AAATG-GCATGTGGTCTCTTATGTGTCCTCA 110929
|||| | || ||||| || ||||||||||
Sbjct 26779 CAATGAGGAT-TGGTCGCTGTTGTGTCCTCA 26808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186111725571905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |