Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 100 7e-16 SEQ29734 87.8 4e-12 SEQ24830 84.2 5e-11 seq4983 84.2 5e-11 >SEQ10860 Length=7223 Score = 100 bits (110), Expect = 7e-16 Identities = 137/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||| | || || ||| || || || | ||| Sbjct 1665 AAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGATACCATTGAAAAT 1606 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| || |||||| || |||||||||||| || || |||| || || || Sbjct 1605 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGA---TCAACAGCGTTTGAT 1550 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||| ||||| ||||| ||||||||||| | ||| | |||||||||| |||| ||||| Sbjct 1549 CTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAATATCCAAAAAGA 1490 Query 206361 GTCTAC 206366 |||||| Sbjct 1489 GTCTAC 1484 >SEQ29734 Length=4748 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||| ||||||| |||||||| | |||||| Sbjct 355 CGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTA 296 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCG 204849 | ||||| ||||| ||||| || |||||||| || || Sbjct 295 CGACCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACG 258 >SEQ24830 Length=1296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||| ||||||| ||||||||| | |||||| | ||||| |||||||| Sbjct 1246 GTGAAGGGTCGACTCCTTCTGGATATTATAGTCTGACAAAGTTCGACCATCCTCCAGCTG 1187 Query 204829 CTTTCCGGCGAAGATAAGCCGTTG 204852 ||| || |||||||| || || || Sbjct 1186 CTTGCCAGCGAAGATGAGACGCTG 1163 >seq4983 Length=3163 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || || || ||||| || || ||||| Sbjct 867 CAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCCCTCTGAT 808 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 807 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 748 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||||||||||||||| | || | |||| |||||| || Sbjct 747 CGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACTACAACATC 688 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 687 CAGAAGGAGTCAACCCTTCAC 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181122674447705