Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq61 306 4e-78 seq4005 118 1e-21 SEQ10860 98.7 9e-16 seq2872 95.1 1e-14 >seq61 Length=55249 Score = 306 bits (338), Expect = 4e-78 Identities = 1196/1853 (65%), Gaps = 72/1853 (4%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || |||||||||| ||||||||| || || |||||||| ||||||| Sbjct 27981 GCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAG 27922 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||||| || || | || |||| | || || || ||| || || || ||||| Sbjct 27921 AAATGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGA 27862 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCA-- 146749 || || || || ||||| ||| || || ||||||| | ||| ||| ||||| Sbjct 27861 CTCTGGTCAATAAAAGCACCGCGATCAGCTGCCATCT---TGATGG---TTGACTTCACC 27808 Query 146750 ----TTTCCCAAGCGGTTTTGTACAGC-CCCTTAACGCTATCTG--GAATACCTTCAATG 146802 ||||||| |||||||||| || ||| || || ||| |||| ||| ||| Sbjct 27807 GAGATTTCCCAGACGGTTTTGTAAAGATCCCGTA---CTTCCTGAGGAATGGATTCGATG 27751 Query 146803 TTTTGAATAGAGCC-CTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGG--CGTGTAAAG 146858 ||||| || ||||| | || |||| || || ||| | || || | |||| Sbjct 27750 TTTTGTATGGAGCCACGACTG-GCAATGATT-TGATTCTTCATGTCATCATCCCATAAA- 27694 Query 146859 GTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAG 146918 | ||||| | | || | |||| ||||| ||||| | ||||| || | || Sbjct 27693 -TCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAA 27635 Query 146919 CACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATAT 146978 || || ||| || | || ||| | |||||||| ||||||||||| || | || Sbjct 27634 AACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGAT 27575 Query 146979 TTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGC 147038 ||||| || | ||| || ||||| || || | || || |||| | || | | | Sbjct 27574 CTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAGCAGCGAGTTTCTAACGCCATGCTC 27515 Query 147039 ACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACAT 147098 ||| || || | || ||| ||||| | | ||| ||| || |||||| Sbjct 27514 TTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACAT 27455 Query 147099 GTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTC 147158 |||||||| || | ||| || | |||| |||||| | || ||| ||||| Sbjct 27454 ATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTC 27395 Query 147159 GCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTG 147218 || |||| ||||| || ||||| || || |||||||| ||||||||| ||| || Sbjct 27394 CTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTG 27335 Query 147219 TTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATC 147278 | || || | |||| || ||||| || || | ||||| || | ||||| || Sbjct 27334 CTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTC 27275 Query 147279 GGCCAAACCCTGGATACCGACGCCGATAGGTCGATG-CTT---TTCG-TTGCTGCGCTTC 147333 ||| || ||||| | || | ||| || || ||||| ||| || | || || || || Sbjct 27274 GGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTC 27215 Query 147334 GCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACT 147393 | || || ||||||| ||| |||||| || ||||| | || | ||| | Sbjct 27214 GGGCA-GC----GGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTT 27160 Query 147394 TTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC-GACACGTACGCATTG 147452 ||||| | | || ||||||| |||||| | || ||| | ||| || ||| Sbjct 27159 TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATT- 27101 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGC 147510 || ||| || || |||| |||||||||||| |||| |||| || || | || | Sbjct 27100 ---CAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGG-GT-GCCGAATATTCA 27046 Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || ||||| | ||| |||||||||||||| ||| || | ||| ||||||||||| ||| Sbjct 27045 ACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTC 26986 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACG 147630 | ||||| | ||| ||||||||||||||||| ||| ||||| ||||| | |||||| Sbjct 26985 CTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACA 26926 Query 147631 AT---AAACCTATGCAG---GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTT 147684 || | ||| | | || || || || ||| ||| ||| |||||| | Sbjct 26925 ATGGCATACCAAAG-AGTTTGTGCTTTAATCACACGATTTGC-----GCGACCCTCGCTC 26872 Query 147685 TCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC 147744 |||||| |||| | |||||| || || || | || | | |||||||||| Sbjct 26871 TCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACAC 26812 Query 147745 TGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCC 147804 | || ||||||| ||||||||| || | || | || || |||||||||||| Sbjct 26811 TTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAACAGATCG 26752 Query 147805 GGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGT 147864 || | ||||| ||||| | ||||| || ||| || || || |||| |||| | Sbjct 26751 GGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTT 26692 Query 147865 TTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGC 147923 || | | ||| || | | |||| |||| ||||| ||||| | ||| | ||| | || Sbjct 26691 TTGAGGTCCAAGAACTC-AAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGC 26633 Query 147924 ACCTTTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCAC 147980 ||| ||||| ||| || || ||||||| || ||| || |||||||| | | Sbjct 26632 GCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAG 26573 Query 147981 CATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCG 148040 |||||| ||| || | | |||||| || ||| | |||| | |||| ||| || Sbjct 26572 CATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCACG 26513 Query 148041 CACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCC 148100 | ||||| || | |||||||| || || | || || || || || | | Sbjct 26512 AATACAATGCACATTGAGCCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCTC 26453 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCA-----AGCAAAAAACAC 148155 | | | || | ||||| |||||| ||| || ||| | | |||||| Sbjct 26452 GACGGACTTGAAAATGCCTTCGATGGAATCG-----GAAACCATTGTTAAAAGGAAACAC 26398 Query 148156 GAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAAC 148215 || |||| || ||| || | || | || | || || || |||||||| Sbjct 26397 GATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTAAAA 26338 Query 148216 AATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATG 148275 | || | || || ||||| | |||| |||||||| ||||| || || Sbjct 26337 TAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATT 26278 Query 148276 CCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTG 148335 || | ||| || | ||| ||||||||||| || |||||||| | || |||||||| Sbjct 26277 CCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCTTT 26218 Query 148336 AGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || | ||| | |||||||| ||| | ||||| || ||||| ||||||| Sbjct 26217 AGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATC 26165 >seq4005 Length=24450 Score = 118 bits (130), Expect = 1e-21 Identities = 233/339 (69%), Gaps = 7/339 (2%) Strand=Plus/Minus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 ||||||| || | ||||| || | ||| |||| | ||||| || |||||||||| | Sbjct 15555 CAATACCAATCACACCGCAACCAATGCGTGCGCCAGCATTGCCAGTTGTCTTGCTCAACT 15496 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 ||| | ||| ||||| ||| | || || ||||| | | |||| |||| || Sbjct 15495 CGTGGCCACCCTTGCCAAGATCATCGGCATCCGCATGGACCACAACAGTGCGTCCAATGA 15436 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| || ||||| || || || ||| | ||||| | | || || | ||| | ||| Sbjct 15435 TGCTGTTCTCGCCAAAGAGAGTTATCTGGCTGTCGGTGATATCGACCGCAGTGGGACCGT 15376 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGT-TCGGA 51779 | | | ||| || |||||||| ||||| | ||||||| || ||| | | || Sbjct 15375 CGC---CGCTGGCCGTGATGTTGCCCAAATCGCCCAAGTGGCGC-TCACCGTCTGTGGGT 15320 Query 51780 GCGCCGTGGTCGCTGCCGGTG-GGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCT 51838 || ||||| || || | ||| |||||||| || || | ||| |||| |||||| | Sbjct 15319 GCACCGTGCTC-CTTCTTGTGCGGGTTGAAATGGGGTCCTGATGACATGCATCCGTTGGT 15261 Query 51839 GGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCC 51877 | ||||||| || || |||||||||||||| ||||| || Sbjct 15260 GTTGTCGCCAAACTCATGCACGTGGAATCCATGCAGACC 15222 >SEQ10860 Length=7223 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| || ||||| ||| | || ||| |||||| | || || |||| | Sbjct 1487 GACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCA 1546 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||||||||||||| || |||||||| || ||| || ||| | Sbjct 1547 AAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 1606 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || || | || | || ||||| || || ||||| Sbjct 1607 TTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTA 1666 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1667 ACGAAGATTTGCAT 1680 >seq2872 Length=9359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/368 (68%), Gaps = 13/368 (4%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || || || ||| ||||| |||||||| ||||| ||||| || || ||| Sbjct 3345 ATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGAC 3286 Query 46974 TTTGCG-TGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACG-ATCC 47031 |||||| || | | || ||| | | ||| | | | | | |||| ||| ||| Sbjct 3285 TTTGCGGTGCTTATGTTCCAACATTTG-GTGCA-GCGGCCT---AGTCGGGAACGCATCA 3231 Query 47032 TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCG 47091 | || | | ||| || |||| || || ||||||| | || | |||||||||| Sbjct 3230 TTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCG 3171 Query 47092 TCGCCTTGCTGGGCATGAAC-GCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || |||| | ||||||||| | | ||| |||| ||||||||| |||||||| || || Sbjct 3170 TCAACTTGATTGGCATGAACTGTGC--TCTGATGTCCGAATATATCGAGTTTGTCGCTGA 3113 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTT-TAATGCTCGTAATCCGTTTGAGT 47208 ||| || ||||| |||| ||| | || |||| || | ||||| || || Sbjct 3112 TCGCCTATTGGTTGAGCTTGGA-GTGGGCAAGATTTACAACACAAAGAATCCATTCTCGT 3054 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || || | || ||||||||||| || |||||||| ||| || || | Sbjct 3053 TCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGTGGGTGAAT 2994 Query 47269 ATAAGCGC 47276 || ||||| Sbjct 2993 ATCAGCGC 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476336523007800