Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3808 138 1e-27 SEQ36764 120 4e-22 >seq3808 Length=15542 Score = 138 bits (152), Expect = 1e-27 Identities = 317/476 (67%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 146860 ACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTC 146919 ||| ||| | ||| || ||||| || || || || || | || || || || | Sbjct 5990 ACCTGCCGCTTAATGTTAAGCTTAGGAAATGGACGAGGCTGCCGCTTTAGTTGCTGTTGC 5931 Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 | || ||||| || || || || || || | || |||| |||||| |||||||| || Sbjct 5930 AATGGTTCCACATGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCA 5871 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 ||||| | |||||||| ||||| | ||||||||||||||||| || ||| ||||| Sbjct 5870 GGCTTCAATCCGGTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTA 5811 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG--CTCCC 147097 || || ||||| || |||||||| | | ||||||||| || || ||||| |||| Sbjct 5810 AAAGGAACCCCGAGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCT 5751 Query 147098 CG----TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGC 147153 || | | ||| || ||||| || | |||||| || ||||| ||||| ||| Sbjct 5750 CGAGATTGCGACACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGT 5691 Query 147154 AGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATC 147213 | ||| ||| ||||| ||||| | | | || | | ||| || | |||| Sbjct 5690 ATATCCAAGGGATTCCACGCCGACATAATGATACGACGATCCGAGGGATTGTTTCGAATC 5631 Query 147214 TCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCC 147273 || || || | |||||| || | ||| || || | ||||| ||||| Sbjct 5630 GTATCAATCACTTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCATCATCGCAGGTG 5571 Query 147274 ACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 ||| ||| ||||| || | |||||| |||||||| || || ||||| || || Sbjct 5570 CGATACTCGGCTCCAAAATGACGCCACTGAAAGCCGTAGACCGGACCCAGATCCCC 5515 >SEQ36764 Length=622 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||| | ||||| ||| |||||| |||| ||| |||||||| || || || ||| | Sbjct 326 TGGGCGAACATGTGGGTCCGCAGCGCGTAGGAGGCGATGTTGAACGGCACGCCGAGGAAC 385 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 |||||| | | |||||| |||||||| || ||| ||||||||| ||||| | |||| Sbjct 386 ATGTCCGCGCTGCGCTGGTAGAGCTGGCAGGACAGCGTCCCGTCGGCGACGTAGAGCTGG 445 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| | ||||||||| ||||||||||| Sbjct 446 AACAGCAGGTGGCACGGGGGCAGCGCCAT 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583151728572000