Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value SEQ45565 116 5e-20 seq5601 98.7 1e-14 seq61 86.0 9e-11 >SEQ45565 Length=619 Score = 116 bits (128), Expect = 5e-20 Identities = 97/116 (84%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || || ||| ||| ||||||||| ||||||||||||||||||| |||||| | ||||| Sbjct 139 GCCGATCTGATCAGCTGGGGCGCCATCGGTGCGCGCACCACCGAAAGCCAGATCCACCGT 80 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATT-GGCTTCAAAAACAGCACCGACGGCA 165864 || ||||| |||||||| | |||||| | |||||||||||| |||||||||||| Sbjct 79 GAAATGGCCTCGGCGCTCTC-CTGCCCGGTCGGCTTCAAAAACGGCACCGACGGCA 25 >seq5601 Length=8218 Score = 98.7 bits (108), Expect = 1e-14 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | |||||||| || ||||||| |||||||| | | | || | |||||| Sbjct 208 ATGTTGAAGGGCGTAACCAGCTCGGGGAAGGTGAGATTTTGTGCTATGGAACGCGGCACG 267 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 ||||||| || || | | ||| ||||| ||||||| | || |||| |||| | Sbjct 268 CCCACCTGATCGATACGCAAATTGGGATCGGGTGTGATGACAGTACGTGCGGAGAAGTCG 327 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACG 1818248 || || |||||||| |||| || || || | |||||||||||||||| ||| || | Sbjct 328 ACACGTTTGCCCATCAAATTACCACGAATGCGACCCTCCTTGCCCTTGAGACGCGCCTTG 387 Query 1818249 AGGCCCTTGGTGGGCTTGCCCGAC 1818272 | ||||| ||| ||||||||| Sbjct 388 ATCGCCTTGAGGGGTTTGCCCGAC 411 >seq61 Length=55249 Score = 86.0 bits (94), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| ||||| |||||| ||||||||||| ||||| |||| || Sbjct 26612 GGTGGCGGCAAGCGACCAGGCGCTTTTGCCATTTACCTGGAACCTTGGCATTCCGATATC 26671 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||||||||||||||| ||||||| | ||| || | || || Sbjct 26672 TTTGAGTTCTTGGACCTCAAAAAGAACACGGGCAAGGAA----GAGCAC--AGAGCTCGT 26725 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 |||||||| |||| | |||||| ||| ||||||||| Sbjct 26726 GATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATG 26764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173364288009010