Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq61 461 1e-124 seq2872 259 7e-64 >seq61 Length=55249 Score = 461 bits (510), Expect = 1e-124 Identities = 1196/1810 (66%), Gaps = 16/1810 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || ||||| || ||||| ||||| || || || || ||| |||| | ||||| Sbjct 27978 GCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAGAAA 27919 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||||| ||| || | || ||||| | ||||| || | |||||||| Sbjct 27918 TGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGACTC 27859 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || || ||||| || | ||| || ||||| || || | ||| | |||||| Sbjct 27858 TGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCACCGAGATTTCC 27799 Query 68575 CAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGG 68629 || | || || ||| ||| | | || | |||| | ||| | ||||| |||| Sbjct 27798 CAGACGGTTTTGTAAAGATCCCGT--ACTTCCTGAGGAATGGATTCGATGTTTTGTATGG 27741 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | |||| | || || ||| |||||| || ||||||| ||| || | | || |||| Sbjct 27740 AGCCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCTAGTTCGGTTA 27681 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | | | ||| |||| || | | || || || || || || | | |||| Sbjct 27680 AATCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGT 27621 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || ||||| || || | || |||||||| |||| || || ||||| |||| Sbjct 27620 AAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATG 27561 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACCATGTGTTATGATTTTATCT 68868 | || ||||| || || || || | | | ||||||| ||||| | ||||||| | Sbjct 27560 CCGTGGGCATTGGAGCTAC-AAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAAT 27502 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 |||||| ||||||||||||| | ||| | ||| | |||||| || ||| Sbjct 27501 TTTAGAGCAGTCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGA 27442 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 ||||| || || | | ||| || |||||||| || || |||| || ||| || Sbjct 27441 ATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGC 27382 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 |||||||| ||||| | ||||| || || || |||||||| |||| || |||||| | Sbjct 27381 TCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAAT 27322 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 |||| ||| || | ||| || | | ||||| || || || || || |||||| Sbjct 27321 ACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 27262 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || ||||| || || || | |||||| ||| || | | || || || | ||||| Sbjct 27261 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 27202 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT 69228 ||||| ||||| || ||||| || | ||||| | || |||| || ||||| ||| Sbjct 27201 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGT 27142 Query 69229 TTGAGAAAATCAAATCGTCCATCTATA---ACAAACATATTCAGTGCTACAGATGCTAGA 69285 || ||||| ||| | ||| | ||||||||||||| |||| ||||| | | Sbjct 27141 TTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAA 27082 Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 || || || || | ||||| | | ||||| | || || || || || || || Sbjct 27081 TTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTG 27022 Query 69346 CATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGA 69405 |||||||| || || | ||| |||||||| ||||| |||| || | ||||||| | || Sbjct 27021 CATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGC 26962 Query 69406 ATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AGC 69464 || ||||||| ||||| |||| |||||||| | ||| | | ||||| || | || Sbjct 26961 ATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAA-GAGTTTGTGC 26903 Query 69465 ATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTC 69524 || || || || || ||| | || || | |||||| ||| || || || Sbjct 26902 TTTAATCACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTC 26843 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 ||| |||||||| || ||||| || ||||| | | ||||||| || ||||| | || Sbjct 26842 ATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTC 26783 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 || ||| || || |||||||| |||||||| ||||| | || |||||||| | Sbjct 26782 ATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACG 26723 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704 | ||| | ||||| || || || || ||||| || || | ||||| | ||||| || Sbjct 26722 AGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGA 26663 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 |||||| ||||| || || || || | | || ||||| || || || ||||| | Sbjct 26662 ATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGAC 26603 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 || | || |||||| | ||||| ||||| || | | |||||| || | ||||| Sbjct 26602 ATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATT 26543 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCC 69884 || ||| | || | | || | || |||||| | | | || || || || || Sbjct 26542 AGTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTGAGCCCAATGCCACC 26483 Query 69885 TGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATC 69944 || ||| ||||| | ||||| | | | | | | || || || ||| ||| Sbjct 26482 AGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATC 26423 Query 69945 ATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 | || |||||| ||| ||||| ||||| || || | | || | ||| || Sbjct 26422 GGAAACCATTGTTAA-AAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAA 26364 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 |||| || || ||||| || || || | ||| || | ||||||||| || || | || Sbjct 26363 ATAACGTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAG 26304 Query 70064 CTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || || || || ||| ||||| ||||| || | ||||| ||| ||||| || | Sbjct 26303 CGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGAC 26244 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 |||| | |||| ||| || || | || || || || || || || || |||| Sbjct 26243 GTTCGGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAA 26184 Query 70184 AATAGTTGTA 70193 |||||||||| Sbjct 26183 AATAGTTGTA 26174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 ||| | ||| || ||||||||||| | ||| || | || ||||||||||| | ||| Sbjct 25853 AAACACTTTCTTAGTTTCCTTGTGCAGATTGGAAACCGCAATTCTGGCTGCCAATTGAGC 25794 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 |||||| | ||| || || || | | ||||| || || |||||||| |||| | ||| Sbjct 25793 ATAGTCGGCATGATGCGTTGTTAAGCTGGCTGCGATCTCAGCAGCTAAATTATCCAGTTC 25734 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | ||||| || || ||| || || | |||||||||| || Sbjct 25733 TTGGGTTGTCACACCACAATAAAGGCCATTTATAACTTTCAAGG 25690 >seq2872 Length=9359 Score = 259 bits (286), Expect = 7e-64 Identities = 571/847 (67%), Gaps = 17/847 (2%) Strand=Plus/Plus Query 39315 TAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 39374 |||||||||| || |||||||| || |||||||| || || |||||||| |||| Sbjct 2976 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 3035 Query 39375 ATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTA 39434 | || || | |||||||| || ||||| ||| || || | || | ||| | Sbjct 3036 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAA 3095 Query 39435 ATTCTGAAATCAAT---CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAAT 39491 || || |||| | ||| || ||||| || || ||| ||||| |||| | Sbjct 3096 GCTC---AACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 3152 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT-GTCTACG 39550 |||| || || | || || || || || || || || ||||| | || || ||| || Sbjct 3153 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTC-ACA 3211 Query 39551 GCCTCTGTTATTAT--CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 || || ||||| || | ||| | | | | ||| || | |||| ||||||| | Sbjct 3212 GCATCCGTTATGATTTCAATGATGCGTTCCCG--ACTAGGCCGCTGCACCAAATGTTGGA 3269 Query 39609 ACATTAAGCAG-GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| || ||||||||||| || || ||||| | | || |||||||| || Sbjct 3270 ACAT-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAG 3328 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 ||||| ||||||||||| || |||||||| || ||||| || |||| ||||| ||| Sbjct 3329 AATGTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCA 3388 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||||||||| || || ||||| |||| || | || || | | | | | Sbjct 3389 CTGAAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCC 3448 Query 39788 TT---ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | ||||| | ||||| || || ||| ||| ||| ||||| ||||| Sbjct 3449 TTCGAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCA 3508 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || ||||| |||||||| | | | || | ||| | | ||| || || || | || | Sbjct 3509 ATGGCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACA 3568 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || |||||||| ||||| | || || || || ||||| || || ||||| || | ||| Sbjct 3569 CTGTACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCC 3628 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || || | || || ||| | ||| | ||| ||| |||||| || || ||||||||| Sbjct 3629 TCGGTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCA 3688 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 ||| ||||| || ||||| ||||| || |||| |||| || | || Sbjct 3689 GAAGCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTG 3748 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||| ||| | || || || || | ||| |||||||| | ||||| ||||| || || Sbjct 3749 GCCCAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCA 3808 Query 40145 GCCTTTT 40151 |||| || Sbjct 3809 GCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686512925872200