Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2872 170 2e-37 seq3808 165 6e-36 SEQ30408 111 1e-19 seq8103 107 2e-18 >seq2872 Length=9359 Score = 170 bits (188), Expect = 2e-37 Identities = 313/453 (69%), Gaps = 17/453 (4%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 ||||| ||||| || ||||| || |||||||| || || || || || |||||| Sbjct 3726 CATTTCATATCGCATGTGTTGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAAT 3667 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| |||||||| || | | || ||||| || |||||||| || Sbjct 3666 CTGGTCGAACGTTTTAGCCAAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTC 3607 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 || |||||||| || ||| | ||||| |||||||||||| | || || || || || ||| Sbjct 3606 CAGATTGCCATGGAGAATGTGCATTCCGAAATGTACAGTGTGCTCATTGACACCTATATC 3547 Query 44015 AAAGATGGGCA----CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGAT 44070 | ||| || |||| | ||| | || ||||| || ||||| | || || | Sbjct 3546 AGGGATCCTCATCAGCGAG-ACTATC---TCTTCAATGCCATTGAAACGATGCCGGCTGT 3491 Query 44071 TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGGAGA 44127 ||| | || ||||||||||| ||| ||||| ||| || | | | ||||| || Sbjct 3490 TAAGCGGAAGGCAGACTGGGCTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGA 3431 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA---GGATCGTTTGCGGC 44184 ||| || | || ||||| | ||| |||||||| ||| |||| ||| | ||||| | Sbjct 3430 ACGTATTATTGCTTTTGCTGCTGTTGAAGGCATCTTC--TTCAGTGGGAGC-TTTGCATC 3374 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||| || ||| | ||||| || || | |||||||| | || || || || || || || Sbjct 3373 CATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGAT 3314 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 ||| |||||||| | ||||| || ||||| Sbjct 3313 CTCTCGCGATGAAGGTCTGCATTGTGACTTTGC 3281 >seq3808 Length=15542 Score = 165 bits (182), Expect = 6e-36 Identities = 383/569 (67%), Gaps = 24/569 (4%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || ||||| ||||| || || || ||||||| ||| ||||||||||| | ||| ||| Sbjct 5515 GGGGATCTGGGTCCGGTCTACGGCTTTCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 5574 Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATT 40985 | ||| || | | |||| || ||||| | ||| || || ||||||||| Sbjct 5575 TGCGATGATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATT 5634 Query 40986 AAATCCGATCCC---GATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 | | ||||| ||| || ||||| || ||| |||||||| || ||| || Sbjct 5635 CGAAACAATCCCTCGGAT---CGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATA 5691 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT-TTGCAAT----- 41096 | |||||| |||| ||||| || | || ||||| || || | ||||| Sbjct 5692 CCCAAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGA 5751 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || ||||| || ||||| |||| || || | |||||||| || ||||| || ||| Sbjct 5752 GGAGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGGCTCGGGGTTCCTTTT 5811 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCT 41216 ||||| || |||||| |||||||| || |||||||| || || ||| || || ||| Sbjct 5812 AACATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCT 5871 Query 41217 GGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT- 41275 ||||| ||||| ||||| | |||||| ||| | || ||||||| | || || || Sbjct 5872 GGTGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCATTG 5931 Query 41276 -AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTG 41334 ||||| ||||| | || | ||| | |||||||| | ||| ||||| || || | Sbjct 5932 CAACAG--CAACTAAAGCGGCAGCCTCGTCCATTTCCTAAGCTTAACATTAAGCG-GCAG 5988 Query 41335 TTGA-AAACATTGATGATTTTTGCATCGATGATTTTG---TCGTTTGCGATTACAATCCG 41390 | | ||| ||||| || ||| | || ||||||| ||||| | |||||||| Sbjct 5989 GTCACAAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTT---GGATACAATCCT 6045 Query 41391 TACCCTAAAATCCACATGGACATGTCTGT 41419 | || || || ||||| ||| |||| Sbjct 6046 CATGAAAAGATTCAAATGGAGATGGCTGT 6074 >SEQ30408 Length=1880 Score = 111 bits (122), Expect = 1e-19 Identities = 340/521 (65%), Gaps = 16/521 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || |||||||| | || | | |||||||| ||| |||| || | ||| Sbjct 1423 CCGAAGATCGTGAATGGTCCGCAGATTCTCGACAAATATGTGGGTGAATCCGAGGCGAAT 1364 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || |||||| |||| || || || ||||| ||| | || ||| | || | || ||| Sbjct 1363 GTGCGACGTCTGTTCGCCGAGGCCGAAGAGGAAGAGAAGCGTCTGGGACCGAATAGTGGA 1304 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG----G 19604 ||||| || || || | ||||| | || || || || ||||| | || |||| | Sbjct 1303 TTGCATATCATCATCTTTGATGAGATCGATGCCATTTGCAAGCAGCGTGGCTCTGTGGCG 1244 Query 19605 TGTAAATG--GAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || | | || || || || || || ||||| | || | ||| | || || || Sbjct 1243 GGCAACAGCGGTGTCCACGATACCGTGGTGAATCAGTTGCTAACCAAAATCGATGGCGTG 1184 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || ||| | || ||||||||||| ||| ||| || | ||||| Sbjct 1183 GATCAGTTGAACAACATTCTGGTGATTGGCATGACCAATCGACGCGATATGATAGATGAG 1124 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | || || ||||| || | || | | || ||||| | || ||| |||| Sbjct 1123 GCGCTGTTGCGTCCCGGACGTCTTGAGGTCCAAATGGAAATCAGTTTGCCCAATGAGGCG 1064 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAA---AATAACCTTT 19837 || || || | || | || ||||| || ||| | ||||| | ||||| | Sbjct 1063 GGTCGCGTTCAGATCCTGAATATACACAC--CAAACGTATGCGGGATTTCAATAAGATC- 1007 Query 19838 TAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAG 19897 || |||||||| || |||| |||||| || ||||| || | ||||| || | Sbjct 1006 --AACGACGATGTGGACAACAAAGAGATTGCATCGCTCACCAAGAATTTCAGCGGTGCTG 949 Query 19898 AACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | || ||||| || || | ||||||||||| | ||| ||| Sbjct 948 AGCTCGAGGGTTTGGTCCGTGCCGCCCAATCGAGTGCCATG 908 >seq8103 Length=9171 Score = 107 bits (118), Expect = 2e-18 Identities = 428/668 (64%), Gaps = 18/668 (3%) Strand=Plus/Plus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 |||||||| | || |||| || ||||| ||| || | || || | | |||||||| Sbjct 432 ATCTTTCGACGTGCCTTTGCCTCACGTGTCTTTCCTCCTGAGCTCGTCGAGCAATTGGGC 491 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 ||| || || || | |||| ||||| || || || || ||||| || || Sbjct 492 ATTAAGCACGTGAAAGGTATACTGCTCTATGGACCTCCTGGAACGGGTAAAACTTTGATG 551 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCT--CCCAAAATTGTAAATGGTCCTG 19450 ||| || | || | | | || ||| || | ||||| ||||| || ||||| Sbjct 552 GCGCGACAGATTGGCACGATGCT--CAACGCACGCGAACCCAAGATTGTGAACGGTCCGC 609 Query 19451 AAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACG 19510 | || | | ||||| || || ||||||| | ||| | |||||| | || || || | Sbjct 610 AGATTCTTGACAAATACGTTGGCGAATCGGAGGCCAATATCCGACGTCTATTCGCCGATG 669 Query 19511 CTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATG 19570 | || || || |||| || | || | || ||| ||||||| || || | |||| Sbjct 670 CGGAGGAGGAGGAAAAGCGACTGGGACCTAATAGTGGACTGCACATCATTATCTTCGATG 729 Query 19571 AATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA------AATGGAGTACATGACA 19624 | | || || || || ||| | | || || | || | | ||| || || || | Sbjct 730 AGATCGATGCCATTTGCAAGGCACGTGGCTCAGTTGCAGGAAATAGTGGTGTTCACGATA 789 Query 19625 CTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAG 19684 | || || |||||||| || | || | || || || | || ||||| |||||||||| Sbjct 790 CGGTCGTGAATCAACTGCTTGCCAAGATCGATGGCGTGGAGCAGCTGAACAATATTTTAG 849 Query 19685 TTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGT 19744 | ||||| ||||| ||| | | || | || || || | | || ||||| || Sbjct 850 TGATTGGTATGACAAATCGTCGCGATATGATTGATGAGGCACTGCTGCGTCCCGGACGTC 909 Query 19745 TGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACA 19804 | || | | || ||||| | | ||| |||| ||||||||| | || | |||| Sbjct 910 TTGAGGTGCAAATGGAAATCAGTCTGCCCAATGAGCAGGGACGTGTGCAGATCCTCAACA 969 Query 19805 TACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGATGTAGATCTAGA-A 19860 |||| || | |||||| | || || || | | |||||| || | | | | Sbjct 970 TACACACGAAACGCATGCGCGAGTTCAACAAGATTGCA---GGCGATGTTGA-CAACACA 1025 Query 19861 GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCC 19920 || ||||| ||| || || || | |||||||| || |||||||| || ||| | ||| Sbjct 1026 GAGATTGCGGCGCGCACGAAGAATTTCAGCGGCGCTGAGCTTGAGGGTTTGGTGCGCGCC 1085 Query 19921 GCCCAATC 19928 || ||||| Sbjct 1086 GCTCAATC 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397232667610525