Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq61 219 4e-52 SEQ10860 104 2e-17 >seq61 Length=55249 Score = 219 bits (242), Expect = 4e-52 Identities = 1004/1570 (64%), Gaps = 47/1570 (3%) Strand=Plus/Minus Query 130411 GACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTT 130470 ||| ||||||||||| ||||||| || ||||| ||||||| ||||||||| ||||| || Sbjct 28003 GACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTT 27944 Query 130471 GAGTCCAATTTTGT--GTCCATAATTG--TGGATGCTGCACATTGTTTGGTAATTGGGTT 130526 ||| || || | | || || |||||| | || ||| ||| ||||||| Sbjct 27943 GAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTA-AC-TTGCC--GTAGTTGGGTT 27888 Query 130527 GCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCA 130586 || ||| ||||||| ||||| || ||||||||||| || | || || |||| Sbjct 27887 CGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCCA 27828 Query 130587 TGTCGAGCATGGTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTAATGT 130643 | | || ||||| || | || ||||| |||| ||||| ||||||| | | Sbjct 27827 TCTTGA---TGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTT 27771 Query 130644 GTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCA 130703 | || ||| | || ||| | | || |||| || |||| || || Sbjct 27770 CCTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCA 27711 Query 130704 TACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTT 130763 | | ||| | || | || | | ||| | |||||||| ||| | | | Sbjct 27710 TGTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACAT 27651 Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823 || || || | || ||||| || ||||||||| || |||| |||||||| | Sbjct 27650 TGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACT 27591 Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883 | || || || | || || || |||| ||| |||||||| || || | || || | Sbjct 27590 CATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAGCAGCGAGT 27531 Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943 | | || || ||| ||||||| || | || ||||||||| || || | Sbjct 27530 TTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGTGG 27471 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGA 131003 || | |||| ||||||||| | || || || || || || | |||| || Sbjct 27470 GTGTC---TTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGT 27414 Query 131004 ACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAAT 131063 | | ||| ||| || || ||||||| || || || || | || || || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 131064 AAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATT 131123 | ||||||||| || || | ||| | | |||| || ||||| || ||||| Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 131124 TCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTA 131183 ||| | ||| || ||||| || | ||||| | |||| ||| | || | |||| ||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 131184 AATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTGTTTAA 131241 |||| |||| | | | || | |||| || || ||||| |||||||| || Sbjct 27233 AATTGGATTTCTTTG--CCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAA 27176 Query 131242 ATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC 131301 ||| | ||| ||| || || |||| ||| | |||||| || || |||| Sbjct 27175 ATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGT-----TTTC 27121 Query 131302 ---GAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTC 131358 || || ||||| ||| | ||| || |||| ||| || || || | || || Sbjct 27120 TCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATC 27062 Query 131359 ATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | |||| | ||||||||| | ||| | || |||| || |||||||| | ||| Sbjct 27061 GGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATT 27002 Query 131419 TTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTC 131478 || |||||||| || || | ||||||| | | |||||| || ||||| || || Sbjct 27001 CTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTC 26942 Query 131479 GACTTGAGTTTCAATAATGT-AT-CGAAAGAGTTTTCGAGC---AGACAATTGATATTTG 131533 ||||||| ||||| |||| || | ||||||||| | || | || ||| ||| Sbjct 26941 AACTTGAGATTCAACAATGGCATACCAAAGAGTTT--GTGCTTTAATCACACGAT--TTG 26886 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAACGAAC 131591 || || | | |||| ||| |||| | | ||||||| | || ||||| | Sbjct 26885 CGCGACCCTCGCTCT-CGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGT-C 26828 Query 131592 TGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTC 131651 | ||||| |||||| | | ||||||| |||||||| | | || || || | Sbjct 26827 T-TCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACAC 26769 Query 131652 GCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTT 131711 |||||||||||| ||| || | ||| || ||||| || ||||| | |||| | | ||||| Sbjct 26768 GCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTT 26709 Query 131712 CTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCA 131771 | | ||| | | ||||| | | || || || || || || | |||||| ||||||| Sbjct 26708 CCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCA 26649 Query 131772 AATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGT 131828 || | || | |||||| ||||| ||| ||||||| |||| |||| ||| | Sbjct 26648 GGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACAT 26589 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGT 131888 | || | || | | ||||||| ||||||| || | | ||||| |||| || Sbjct 26588 TATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCG 26529 Query 131889 AGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGA 131948 || |||| ||||| | || || || ||||| ||||| || || || |||| |||| Sbjct 26528 AGGTGCCCTTGGCACGAATACAATGCACATTGAGCCCAATGCCACCAGCGGATTTGGAGA 26469 Query 131949 TTAGTGCGCA 131958 | | ||| || Sbjct 26468 TCATTGCACA 26459 >SEQ10860 Length=7223 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || || ||||| |||||||| |||||||| ||| Sbjct 1454 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 1513 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | ||||| | || || ||||| | || | |||||||||||| || || Sbjct 1514 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 1573 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| ||| | |||| | || || | | ||| || Sbjct 1574 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACC 1633 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || ||||| || ||||| || ||||||||||| Sbjct 1634 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424695627368760