Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2872 107 6e-18 seq61 89.7 2e-12 >seq2872 Length=9359 Score = 107 bits (118), Expect = 6e-18 Identities = 109/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 443718 GCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTT 443777 |||||||||| || ||||| | || || || || |||||| || |||||||||||| | Sbjct 3420 GCTTTTGCTGCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTT-GCATCCATCTTCTGGCT 3362 Query 443778 GAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGA 443837 ||| |||||||||||||||| || || || || |||||| ||||| ||| || || Sbjct 3361 GAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGA 3302 Query 443838 GGGTTTGCATTGCGACTTCGC 443858 ||| ||||||| ||||| || Sbjct 3301 AGGTCTGCATTGTGACTTTGC 3281 >seq61 Length=55249 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| || | ||||| || || |||||||| || ||||||||||| |||||||| || Sbjct 26567 CCCATGCTCAGAGTGTTTAATAATGTGGCTCGTTATGTCGATCAAGGTGGCGGCAAGCGA 26626 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 ||||| || || |||| |||||||| || ||||| |||| || Sbjct 26627 CCAGGCGCTTTTGCCATTTACCTGGAACCTTGGCATTCCGATAT 26670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587397737661725