Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_027985.1 Length=68016 Score E Sequences producing significant alignments: (Bits) Value seq963 140 1e-28 seq2825 84.2 1e-11 >seq963 Length=26998 Score = 140 bits (154), Expect = 1e-28 Identities = 184/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 40178 CGATTTCGCCGCCAAGGACGGCACACCGATCTACGCG-GCCCAGGGCGGCACCGTGGCCT 40236 ||| ||||||||| |||||||| || ||||||| || | ||| ||||| || || Sbjct 21950 CGACTTCGCCGCCGCCGACGGCACCCCCTTCTACGCCTGCGCCGGG-GGCACAGTCCTCT 22008 Query 40237 ACATCGGCAGAGCCGACGGTTTCGGGCAATGGATCGTGATCGACCACCNNNNNNNNNNNN 40296 |||||||| ||| ||| | ||| || ||||| || ||||||||| Sbjct 22009 ACATCGGCCCCGCCAGCGGCTACGGTCAGTGGATTGTCCTCGACCACCCGGACAGTGAGG 22068 Query 40297 NTGGCGGCACGACCGTCTACGGACACATGTGGGACGCGTTCGCCACCGGACTACGTCAAG 40356 |||||| ||||| ||||| || ||||||||||| | ||| || || || | || | Sbjct 22069 GCGGCGGCGTGACCGAGTACGGCCATATGTGGGACGCCTACGCGACTGGCCTGCAGCAGG 22128 Query 40357 GGCAGCGCGTCGAGGCCGGGCAGCTCATCGCCTACGTCGGCACGAACGGTCAATCGACCG 40416 ||||| | || || || || |||||||||| ||||||||| |||| ||||| |||||| Sbjct 22129 GGCAGTGGGTTGATGCAGGACAGCTCATCGGCTACGTCGGGTCGAATGGTCAGGCGACCG 22188 Query 40417 GCCCACATCTGCACTTC 40433 |||| || || ||| || Sbjct 22189 GCCCGCACCTTCACCTC 22205 >seq2825 Length=19190 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 45682 GGTGGGCCGGGCCAGCACGACGCAGTCACACATCGGGAAATCGGCACCCTCGGTGAGCAC 45741 ||| || || ||||||||||| |||||||| ||||| || || |||||||||||||| Sbjct 6612 GGTAGGACGTGCCAGCACGACACAGTCACAGCGGGGGAAGTCCGCGCCCTCGGTGAGCAC 6553 Query 45742 CTGCACAGTGACCA 45755 |||||||||||||| Sbjct 6552 CTGCACAGTGACCA 6539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 217404170896185