Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq61 154 2e-32 seq735 100 4e-16 >seq61 Length=55249 Score = 154 bits (170), Expect = 2e-32 Identities = 588/912 (64%), Gaps = 27/912 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||||| || || || |||||| | ||||||||||||| ||| || || || || Sbjct 27622 GTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGA 27563 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || |||||||| || | | || ||| | || || | ||| ||||| ||| Sbjct 27562 TGCCGTGGGCATTGGAGCTACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATT--TTC 27505 Query 110827 C--TTGAGAACATCCCAGTCGTAGTTGAGCTTG-GTTTCACCT-TCCCACATGTCAAACT 110882 || ||| || ||| || | | |||| | | | | |||||||| || ||| Sbjct 27504 AATTTTAGAGCAGTCCAATCCCAAAGG--CTTGTGGGTGTCTTGTCCCACATATCGTACT 27447 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || | | | | ||| |||| | |||||||||||| ||| | || || Sbjct 27446 GCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAG 27387 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| ||||| || ||||| |||| | | || |||||||| ||||| | ||| | Sbjct 27386 CCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGA 27327 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | ||||| || ||| | | | || || ||| || | || || | | Sbjct 27326 GCAATACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGC 27267 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAA 111119 | ||||| || | ||||| || | |||| | ||| || |||| | | | | | Sbjct 27266 CCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGC---A 27210 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 ||||| |||| | ||||||| | ||| | |||| |||| ||| | || || | || Sbjct 27209 GCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTT 27150 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | ||||| | |||| || || ||||| | | ||| || | | ||| | Sbjct 27149 CCTTCAGTTTCTTGAAATCGAATGTTT---TCTCTGAAGTCACAAACATATTCAAGGCTA 27093 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | |||||||||||||| || || ||||||| | | || || | |||||| || | Sbjct 27092 TCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGC 27033 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | |||| | || || || || | ||||| || || |||||| ||||||| | | Sbjct 27032 AGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGT 26973 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||| |||||||||| || || || ||||| || |||| | ||| || | ||||| Sbjct 26972 CCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAA 26913 Query 111420 CATCGGCGGCTGGTACAATGGC---GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 | | || | ||| | || || || ||||| |||||||||||| || | Sbjct 26912 GA---GTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACA 26856 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 | ||||| || || ||| |||| | || || ||||| ||||| || | Sbjct 26855 GCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACA 26796 Query 111537 GAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 | ||||| | || | || |||| || |||||||| || || || || ||||||| || Sbjct 26795 GCGACCAAT--CCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGC 26738 Query 111595 TGAAAAGAGATC 111606 | |||||||| Sbjct 26737 GTAGAAGAGATC 26726 >seq735 Length=17191 Score = 100 bits (110), Expect = 4e-16 Identities = 172/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| ||||| ||||||| ||||| |||||||| | |||||| | | ||||||||| Sbjct 11629 TCTTTTCCACCGGTGAGACGAGTACCGAATTGACCGCGTGGCTCTAACAAATTAATGTTG 11570 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || || || ||||| | ||||| || || ||||| || || || || |||||||| Sbjct 11569 TTCGATCCCACATAGTTCTGCGCCAAATTCACAATGGTCATTTGC-AGCGAGACTTCACC 11511 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 || || || | |||| | || ||||| | ||| || ||| || ||||| | |||| Sbjct 11510 ATGATGATACGATGACATTTCGGCAACGGAACCCGACAGCTGGGCAACCTTAACTTCACG 11451 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| || | || || | | |||| || |||| ||| |||||| | ||||| Sbjct 11450 CTTGTCATTACGCTTAAAACACGTAAACATAACCTTCCGCTGACCAGGCTTTAAGCCATC 11391 Query 182045 CGCCATA 182051 ||||| Sbjct 11390 TACCATA 11384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627670057308000