Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2872 111 2e-19 seq735 96.9 4e-15 >seq2872 Length=9359 Score = 111 bits (122), Expect = 2e-19 Identities = 289/436 (66%), Gaps = 6/436 (1%) Strand=Plus/Plus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 ||||||||||||||| || || || ||||| ||| ||||||| || ||||| || Sbjct 3007 CTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCCATGAACGAGAATGGATT 3066 Query 129802 CTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTAC 129859 ||||| ||| ||| |||| |||||||| || | || ||||| | ||| || Sbjct 3067 CTTTGTGTTGTAAATCTTGC--CCACTCCAAGCTCAACCAATAGGCGATCAGCGACAAAC 3124 Query 129860 TCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCC 129919 || || || || |||||| | ||||||| || || | ||| || ||||| || Sbjct 3125 TCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTTGACGGGCAGCGCATCG 3184 Query 129920 AAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTG 129979 || |||| ||| |||||| |||||| ||| | ||| | ||| ||| Sbjct 3185 GTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTTCAATGATGCGTTCCCGA 3244 Query 129980 CCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTC 130038 | ||| | ||| | || | || ||| | ||| ||||| || || ||||| || Sbjct 3245 CTAGG-CCGCTGCACCAAATGTTGGAACATAAGCACCGCAAAGTCACAATGCAGACCTTC 3303 Query 130039 GTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAA 130098 || || ||||| | ||| || ||||| || || ||||| || || |||||||||| Sbjct 3304 ATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATAAGTCCACGCTTCTTCAG 3363 Query 130099 CCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAA 130158 |||||| || | ||| ||| ||||||||| || || ||| || || |||| Sbjct 3364 CCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCAACAGCAGCAAAAGCAAT 3423 Query 130159 GAGACGCTCAGCAAAG 130174 | ||| ||| ||||| Sbjct 3424 AATACGTTCACCAAAG 3439 >seq735 Length=17191 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 |||||| ||||| ||||||| || || |||||||| | |||||| | | ||| || || Sbjct 11630 ATCTTTTCCACCGGTGAGACGAGTACCGAATTGACCGCGTGGCTCTAACAAATTAATGTT 11571 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 ||| || |||| |||| | ||||| || ||||| || || || || |||||||||| Sbjct 11570 GTTCGATCCCACATAGTTCTGCGCCAAATTCACAATGGTCATTTGC-AGCGAGACTTCAC 11512 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 | ||||| || | ||| | || || || | ||| || ||| || ||||| | ||| Sbjct 11511 CATGATGATACGATGACATTTCGGCAACGGAACCCGACAGCTGGGCAACCTTAACTTCAC 11452 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGT 179302 |||| || | || |||| | |||| ||||| | || |||||| | ||| | Sbjct 11451 GCTTGTCATTACGCTTAAAACACGTAAACATAACCTTCCGCTGACCAGGCTTTAAGCCAT 11392 Query 179303 CGGCCAT 179309 | |||| Sbjct 11391 CTACCAT 11385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618078788063800