Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq61 183 4e-41 >seq61 Length=55249 Score = 183 bits (202), Expect = 4e-41 Identities = 596/912 (65%), Gaps = 23/912 (3%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || |||||||||| ||| | ||||| || ||||| || |||||| | || |||| | | Sbjct 26723 CGTGATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATGAAGCGTGTGGAGGCCAAT 26782 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT---GGGT 104812 | ||||||| || || ||||| ||||| || || || || | ||| ||| Sbjct 26783 GAGGATTGGTCGCTGTTGTGTCCTCACAAGTGTCCCGG---CTTGGAAGACGTTTGGGGG 26839 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || || ||||| || || |||||||||||| || ||||| || | | | | Sbjct 26840 GATGACTTTGAGAAGCTGTATACAAAGTACGAGAGCGAGGGTCGCGCAAATCGTGTGATT 26899 Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | | ||| | || ||| | | |||||| |||||||| || || ||| Sbjct 26900 AAAGCACAAACTCTTTGGTATGCCATTGTTGAATCTCAAGTTGAGACTGGCACTCCGTAC 26959 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| | ||| ||| | || ||| ||||| ||||| ||||| | || ||||| Sbjct 26960 ATGCTCTTCAAGGACTCTTGCAACAGGAAGAGCAATCAGCAGAATGTTGGCACCATCAAA 27019 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 | ||| ||||| || ||||| | |||| | | | ||||||| || || || Sbjct 27020 TGCAGCAACCTCTGCACTGAAATTGTTGAATATTCGGCACCCGATGAGATTGCCGTCTGC 27079 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 || | ||||| || || | | || |||| | |||||| || |||| |||| Sbjct 27080 AATTTGGCATCGATAGCCTTGAATATGTTTGTGACTTCAGAGAAAA---CATTCGATTTC 27136 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | ||||| | |||||||| ||||||||||||| ||| | |||| | | ||||||| Sbjct 27137 AAGAAACTGAAGGAAGTTACTAAAACTGTCACCAGAAATTTGAACAAAATCATTGATATC 27196 Query 105173 AATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 |||| || ||| || || || ||||| ||| | ||||| ||||| ||||| Sbjct 27197 AATTACTA-TCCGCTGCCCGA-GGCAAAGAAATCCAATTTAAGACATCGTCCCATTGGCA 27254 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 105290 | || |||||||| | || || | || ||||| || | | ||| ||| Sbjct 27255 TTGGCGTTCAGGGCTTTGCCGACGCCTTAATTCTGATGCGTTTTCCCTATGAGAGTGACA 27314 Query 105291 AAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGA 105350 |||| ||||| || || || || ||||| || | | || |||||||| | Sbjct 27315 AAGCCGTATTGCTCAATCAGCAGATCTTCGAAACCATCTACTATGGTGCCCTTGAGGCCA 27374 Query 105351 GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 105410 ||| ||| |||| | || ||||| |||||||||| | |||| ||| | | | Sbjct 27375 GTTGTGAGCTGGCTCAAAAGGACGGTCCCTATGAAACCTACGCTGGTTGTCC-GGTGAGC 27433 Query 105411 AAGGG-GTGCTTCAATTTGATATGTGGGA-AGGTGAGAC-CAAGCTTCACTACGACTGGG 105467 ||||| | || || | ||||||||||| | | | | ||||| | | || ||| Sbjct 27434 AAGGGAATTCTGCAGTACGATATGTGGGACAAGACACCCACAAGC--CTTTGGGATTGGA 27491 Query 105468 AAGCTCTCAA--GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 ||||| || ||| ||||| ||| | || || | ||| || || | ||||| Sbjct 27492 CTGCTCTAAAATTGAA--AATCAAAGAGCATGGCGTTAGAAACTCGCTGCTTGTAGCTCC 27549 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||| || || || || || || ||| ||||||||||||| | |||||| || || || Sbjct 27550 AATGCCCACGGCATCTACTGCCCAGATCATGGGTAATAATGAGTCCTTTGAGCCGTATAC 27609 Query 105586 GACGAACATCTA 105597 | ||||| || Sbjct 27610 TTCAAACATTTA 27621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582924659510200