Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3808 95.1 9e-15 >seq3808 Length=15542 Score = 95.1 bits (104), Expect = 9e-15 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 111655 CGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGC 111714 || ||||| || || || ||||| || ||||| || | || || ||| || || Sbjct 5984 CGCTTAATGTTAAGCTTAGGAAATGGACGAGGCTGCCGCTTTAGTTGCTGTTGCAATGGT 5925 Query 111715 TGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCC 111774 | | ||||| | ||| ||||| | |||||| || |||| || || | ||||| | Sbjct 5924 TCCACATGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGCTTC 5865 Query 111775 AAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGC 111834 || || || | || ||||||||||| ||||| || ||| || |||||||| || Sbjct 5864 AATCCGGTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAAGGA 5805 Query 111835 ACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT------TATTT 111888 || || || ||||| ||| | || || || || ||||| || |||| | | Sbjct 5804 ACCCCGAGCCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGAGAT 5745 Query 111889 TGTGACACATAAAATTG-ACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || |||||||| || || || ||| | || |||||||||| |||||| Sbjct 5744 TGCGACACATAGAACTGCACCAAGCA-GTGGCAAGGAGGCAGTGCCAT 5698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391725363930115