Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2872 104 3e-17 seq61 100 3e-16 SEQ28400 95.1 1e-14 >seq2872 Length=9359 Score = 104 bits (114), Expect = 3e-17 Identities = 351/534 (66%), Gaps = 21/534 (4%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||||||| || | || || || ||| ||| ||||||| |||||| Sbjct 3801 TCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTGATTGGGCCAAGCTT 3742 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 | | | |||| |||||||| | || |||||||||| || || ||||||| Sbjct 3741 ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTTGCTGCTTCTGATGGA 3682 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTT---CCAAGGATGTCCAGATTGCCGAGGCC 59789 ||||| | |||||| | | | |||| ||| ||||| | || ||| | ||||||| Sbjct 3681 ATTGTTAACGAAAATCTGGTC--GAACGTTTTAGCCAAGAA-GTGCAGGTGACCGAGGCA 3625 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | || || | | ||| || ||| | | || ||||| | |||| | Sbjct 3624 CGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAAATGTACAGTGTG 3565 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA-AGGCTGGTCTGTTCCGTGCCATAGA 59908 | || || | | ||| |||||| | || || || ||| ||| |||||| || Sbjct 3564 CTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACTA-TCTCTTCAATGCCATTGA 3506 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC 59968 ||| || || ||||| | || ||||| ||||| | ||||| | | | || Sbjct 3505 AACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGGATCTCTTC-GAAGG 3447 Query 59969 AT--CA--TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCT 60023 | || |||| ||||| | || |||||||| ||| || ||||| ||||||||| | Sbjct 3446 CTGCCAACTTTGGTGAACGTATTATTGCTTTTGC-TGCTGTTGAAGGCATCTTCTTCAGT 3388 Query 60024 GGCTCGTTCTGTGCT---ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 || | || ||| || |||||||| || |||||||| || ||||| || || | Sbjct 3387 GG---GAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACA 3331 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||||| |||| || || || || || || ||| || ||||| ||| Sbjct 3330 TTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGGTG 3277 >seq61 Length=55249 Score = 100 bits (110), Expect = 3e-16 Identities = 339/528 (64%), Gaps = 0/528 (0%) Strand=Plus/Minus Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 |||||||| ||||| ||||| |||| || || ||| || | ||||| ||||| Sbjct 27091 CGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCA 27032 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 | || | ||||||||||| | |||| ||| ||||||||| ||| || | ||| Sbjct 27031 GAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTC 26972 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 |||| || ||||||||| || || |||||||| ||| | | || | | | ||| | Sbjct 26971 CTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAG 26912 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTC 79295 | || | || || ||||||| ||||| | |||| || Sbjct 26911 AGTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTT 26852 Query 79296 GTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTG 79355 | || | ||||| | || || || ||| || |||| ||| || |||| ||| Sbjct 26851 CTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGA 26792 Query 79356 CCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAA 79415 ||| ||||| | ||| || || ||| || || || || ||||||| ||| ||| Sbjct 26791 CCAATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAA 26732 Query 79416 GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCAT 79475 ||| || || | ||| || | |||| |||| || || | || || | Sbjct 26731 GAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAA 26672 Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 ||| |||| ||||| || ||||| || ||||| || | || ||||||||||| || Sbjct 26671 GATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACC 26612 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 || | ||| || || ||| || || || |||| |||||||||||| Sbjct 26611 TTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCAC 26564 >SEQ28400 Length=5104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 272/412 (66%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGCATG----CAACGCCGGTTCT 166156 |||| | ||||||||||| ||||| ||||| |||||| || ||| |||| Sbjct 1321 TCGGCATCGGACCGGCCGGCACCGGCAAGACCTACCTGGC-TGTCGCCAAGGCCGTG--- 1266 Query 166157 CACGCACTGGCGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGT-GAGCGT 166215 || || || || || |||| || | ||||| || || || ||||| ||| | Sbjct 1265 CAGGCGCTCCAGAAGCAGCAGGTCACCCGCATCATCCTCACCCGGCCCGCCGTCGAG-GC 1207 Query 166216 CGAGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGCAGAAGATGGAGCCGTGGACTCG 166275 | |||| ||| ||| ||||| ||||||| |||| ||||||| | || | || Sbjct 1206 GGGGGAGAAGCTCGGCTTCCTGCCCGGCACACTCGGTGAGAAGATCGGCCCCTACCTCCG 1147 Query 166276 ACCCATGTTCGACGCCCTGTACCGGTACATGAGC---CCTAAGAAGGTTCGGGATCTCAT 166332 || ||| |||||| ||| || ||||| | || | | | || | ||||| Sbjct 1146 GCCGTTGTACGACGCGCTGG---GGGACATGCTCGACCCGACGGACGTCCCCCGGCTCAT 1090 Query 166333 GGAAAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAA 166392 || |||||||||||| || ||||||||||||||||| || || || || Sbjct 1089 CGAGTCCGGGGTCATCGAGATCGCGCCGCTGGCGTACATGCGCGGACGCACCCTCAACGG 1030 Query 166393 CGCCTGGATTATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCT 166452 |||| | ||| || ||| ||||||| | || |||| |||||||||||| | || Sbjct 1029 GGCCTTCGTCATCCTCGACGAGGCGCAGAACACCACCCCGGCGCAGATGAAGATGTTCCT 970 Query 166453 GACCCGGATCGGGGAAGGTTCGAAGATGATCGTCGCGGGTGACACGGCCCAG 166504 |||||| |||| || ||||||| ||||| | || ||| | ||||| Sbjct 969 CACCCGGCTCGGTTTCGGCACGAAGATCGTCGTCACCGGCGACCTGTCCCAG 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548208678301200