Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq735 122 1e-22 seq2872 116 4e-21 >seq735 Length=17191 Score = 122 bits (134), Expect = 1e-22 Identities = 189/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||| ||| || ||||| | ||||| ||||||||||| Sbjct 11656 GTGAAAATGTAACGAGCGCTTGCACAATCTTTTCCACCGGTGAGACGAGTACCGAATTGA 11597 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||| || | || | |||||| | |||||| |||| || ||||| || ||| Sbjct 11596 CCGCGTGGCTCTAACAAATTAATGTTGTTCGATCCCACATAGTTCTGCGCCAAATTCACA 11537 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| || | |||||||| ||||||| | | || || ||| | ||| Sbjct 11536 ATGGTCATTTGCAGCGAGACTTCACCATGATGATACGATGACATTTCGGCAACGGAACCC 11477 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | |||||| || ||||| | || | |||| || ||| | || | | | || | Sbjct 11476 GACAGCTGGGCAACCTTAACTTCACGCTTGTCA--TTACGCTTAAAACACGTAAACATAA 11419 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| ||||||| ||||| | ||||| Sbjct 11418 CCTTCCGCTGACCAGGCTTTAAGCCATC 11391 >seq2872 Length=9359 Score = 116 bits (128), Expect = 4e-21 Identities = 175/247 (71%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 ||| ||||| || |||| |||||||| | |||||||| || || || | ||| Sbjct 3277 CACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAG 3336 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 ||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||| Sbjct 3337 TCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAA 3396 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGT----GCATCGGAAG 74922 ||||||||| ||| ||||| || | || |||| | | || | | || | |||| Sbjct 3397 GATGCCTTCAACAGCAGCAAAAGCAATAATACGTT-CACCAAAGTTGGCAGCCTTCGAAG 3455 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 ||||||| ||||||| || || || || || || || || | || || || || | Sbjct 3456 AGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCAT 3515 Query 74983 GGAAGAG 74989 |||||| Sbjct 3516 TGAAGAG 3522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546900632579000