Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4710 179 4e-40 seq4983 158 1e-33 SEQ10860 149 7e-31 SEQ29734 95.1 1e-14 seq735 86.0 7e-12 >seq4710 Length=78879 Score = 179 bits (198), Expect = 4e-40 Identities = 178/229 (78%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || || || ||||| ||| || Sbjct 8831 AATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCATC 8772 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||||||||| || || |||||||| ||||| || ||||| || Sbjct 8771 TGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCA 8712 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||||| ||| || || ||||||| || Sbjct 8711 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTACAA 8652 Query 27585 TGTCCAAAAGGAATCCACTCTT-CATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||| || | || ||||||| || ||||| Sbjct 8651 CATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8603 >seq4983 Length=3163 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| ||||| | ||||||||| | | Sbjct 870 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCCCTCT 811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 810 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 751 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| | || |||| ||||||||| | ||||| || Sbjct 750 CAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACTACAAC 691 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | || | ||||| || ||||| Sbjct 690 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 644 >SEQ10860 Length=7223 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || ||||| || ||||||||||| || | Sbjct 1680 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1621 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || ||||||||||| || |||||||||||||| || Sbjct 1620 GATACCATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 1561 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || |||||| | || |||| || || || | || || ||| Sbjct 1560 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 1501 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || | || | || | || ||||||||||| Sbjct 1500 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 1454 >SEQ29734 Length=4748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 |||||| || || ||||| |||||||| ||||||| |||||| | | |||||||| | Sbjct 257 GCGTCTCATCTTCGCTGGCAAGCAACTGGAGGATGGTCGTACTTTGTCCGACTATAACAT 316 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| || |||||||| | ||||||||||| ||||| || Sbjct 317 CCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTCCGCGGAGG 361 >seq735 Length=17191 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 32045 GTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACG 32104 |||| | ||||| || ||||||||||| | ||| || || | | ||||| || | Sbjct 11452 GTGAAGTTAAGGTTGCCCAGCTGTCGGGTTCCGTTGCCGAAATGTCATCGTATCATCATG 11511 Query 32105 GCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 | || | ||||| || |||||||| || | || ||||||| ||| || | || | Sbjct 11512 GTGAAGTCTCGCTGCAAATGACCATTGTGAATTTGGCGCAGAACTATGTGGGATCGAACA 11571 Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224 || | || || | |||||| || || || || || || ||| ||||||| || ||| Sbjct 11572 ACATTAATTTGTTAGAGCCACGCGGTCAATTCGGTACTCGTCTCACCGGTGGAAAAGATT 11631 Query 32225 CTGCGAGCTCCCGTTACATCTTCAC 32249 ||| ||| | |||||||| ||||| Sbjct 11632 GTGCAAGCGCTCGTTACATTTTCAC 11656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569981722987600