Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4710 179 4e-40
seq4983 158 1e-33
SEQ10860 149 7e-31
SEQ29734 95.1 1e-14
seq735 86.0 7e-12
>seq4710
Length=78879
Score = 179 bits (198), Expect = 4e-40
Identities = 178/229 (78%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || || ||||| || || || ||||| ||| ||
Sbjct 8831 AATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCATC 8772
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||||| ||| |||||||||| || || |||||||| ||||| || ||||| ||
Sbjct 8771 TGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCA 8712
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || || ||||| ||||| || ||||||| ||| || || ||||||| ||
Sbjct 8711 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTACAA 8652
Query 27585 TGTCCAAAAGGAATCCACTCTT-CATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||| || | || ||||||| || |||||
Sbjct 8651 CATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8603
>seq4983
Length=3163
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || |||||||| ||||| | ||||||||| | |
Sbjct 870 ATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCCCTCT 811
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 810 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 751
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| | || |||| ||||||||| | ||||| ||
Sbjct 750 CAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACTACAAC 691
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| | || | ||||| || |||||
Sbjct 690 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 644
>SEQ10860
Length=7223
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || || || || ||||| || ||||||||||| || |
Sbjct 1680 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1621
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || || || ||||||||||| || |||||||||||||| ||
Sbjct 1620 GATACCATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 1561
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || ||||| || |||||| | || |||| || || || | || || |||
Sbjct 1560 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 1501
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| || || || | || | || | || |||||||||||
Sbjct 1500 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 1454
>SEQ29734
Length=4748
Score = 95.1 bits (104), Expect = 1e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587
|||||| || || ||||| |||||||| ||||||| |||||| | | |||||||| |
Sbjct 257 GCGTCTCATCTTCGCTGGCAAGCAACTGGAGGATGGTCGTACTTTGTCCGACTATAACAT 316
Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||||| || |||||||| | ||||||||||| ||||| ||
Sbjct 317 CCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTCCGCGGAGG 361
>seq735
Length=17191
Score = 86.0 bits (94), Expect = 7e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 32045 GTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACG 32104
|||| | ||||| || ||||||||||| | ||| || || | | ||||| || |
Sbjct 11452 GTGAAGTTAAGGTTGCCCAGCTGTCGGGTTCCGTTGCCGAAATGTCATCGTATCATCATG 11511
Query 32105 GCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164
| || | ||||| || |||||||| || | || ||||||| ||| || | || |
Sbjct 11512 GTGAAGTCTCGCTGCAAATGACCATTGTGAATTTGGCGCAGAACTATGTGGGATCGAACA 11571
Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224
|| | || || | |||||| || || || || || || ||| ||||||| || |||
Sbjct 11572 ACATTAATTTGTTAGAGCCACGCGGTCAATTCGGTACTCGTCTCACCGGTGGAAAAGATT 11631
Query 32225 CTGCGAGCTCCCGTTACATCTTCAC 32249
||| ||| | |||||||| |||||
Sbjct 11632 GTGCAAGCGCTCGTTACATTTTCAC 11656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569981722987600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |