Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value SEQ17778 179 3e-40 SEQ10860 158 1e-33 seq4710 125 6e-24 >SEQ17778 Length=11298 Score = 179 bits (198), Expect = 3e-40 Identities = 323/465 (69%), Gaps = 14/465 (3%) Strand=Plus/Plus Query 135306 TAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAG 135365 ||||||| ||||| |||||||| || ||||||||||| ||| || | || ||| || | | Sbjct 3797 TAGTGCGACGCGAGTTGGCGGATAACTTTTGTTATTACAACGAAAACTACGATAGCTT-G 3855 Query 135366 AAGG--TGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGAT---CGCAG 135420 |||| | |||| |||||| | || | | | | || || | ||| || || Sbjct 3856 AAGGGATTGTCCGAT-TGGGCGTATCAGAGTCTCGAAGCCCATCGCAAGGATAAACGTAG 3914 Query 135421 AGACTTTTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAA 135480 | ||| || || | || || ||| || ||| || ||||| | ||||| Sbjct 3915 ---CCCTTGCTATACACTGGACGAACTGGAGCAGTCGTGCACCTATGACGACCTTTGGAA 3971 Query 135481 CGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTAT 135538 | |||| ||| |||||| | | ||| ||||||||||| |||||| || | |||||| Sbjct 3972 CTCGGCGCAATTGCAGCTGGTCAATGAG--GGCAAAATGCATGGATTTCTGAGAATGTAT 4029 Query 135539 TGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATA 135598 ||||| || |||||| | |||||| | | | | || | ||||||| | | ||| Sbjct 4030 TGGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGCTGGAGTATAGCATA 4089 Query 135599 TTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATG 135658 || | || || | |||||| | ||||| |||||| | || || || || || || ||| Sbjct 4090 TTGCTGAACGACAAATACAGTCTGGATGGCCGCGATCCCAACGGTTATGTGGGCTGCATG 4149 Query 135659 TGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATT 135718 |||||| | | ||| | || ||| | | |||||||||||| | || ||||||||| Sbjct 4150 TGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCTATATTCGGCAAGATT 4209 Query 135719 CGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 ||||||||||||||| | || |||| | |||||||| |||| ||| Sbjct 4210 CGCTATATGAACTATCAGGGATGTAAACGAAAATTTGATGTTAAT 4254 >SEQ10860 Length=7223 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | || |||||||| || |||||||| Sbjct 1680 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || ||||| ||||||||||| || || || |||||| Sbjct 1620 GATACCATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 1561 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||||| ||||||||||| | || ||||||||||||| Sbjct 1560 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 1501 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || || || ||||| | || | || ||||| Sbjct 1500 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 1454 >seq4710 Length=78879 Score = 125 bits (138), Expect = 6e-24 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| | || || || || ||||| || || Sbjct 8830 ATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCATCT 8771 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || |||||||| ||||| || || || ||||| Sbjct 8770 GATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 8711 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || || || | || || |||||| Sbjct 8710 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTACAAC 8651 Query 27168 ATTCAAAAGGAGTCGA-CCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||| |||| || ||||| ||||| |||| ||||| || Sbjct 8650 ATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 8600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434667751089600