Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
SEQ17778 179 3e-40
SEQ10860 158 1e-33
seq4710 125 6e-24
>SEQ17778
Length=11298
Score = 179 bits (198), Expect = 3e-40
Identities = 323/465 (69%), Gaps = 14/465 (3%)
Strand=Plus/Plus
Query 135306 TAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAG 135365
||||||| ||||| |||||||| || ||||||||||| ||| || | || ||| || | |
Sbjct 3797 TAGTGCGACGCGAGTTGGCGGATAACTTTTGTTATTACAACGAAAACTACGATAGCTT-G 3855
Query 135366 AAGG--TGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGAT---CGCAG 135420
|||| | |||| |||||| | || | | | | || || | ||| || ||
Sbjct 3856 AAGGGATTGTCCGAT-TGGGCGTATCAGAGTCTCGAAGCCCATCGCAAGGATAAACGTAG 3914
Query 135421 AGACTTTTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAA 135480
| ||| || || | || || ||| || ||| || ||||| | |||||
Sbjct 3915 ---CCCTTGCTATACACTGGACGAACTGGAGCAGTCGTGCACCTATGACGACCTTTGGAA 3971
Query 135481 CGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTAT 135538
| |||| ||| |||||| | | ||| ||||||||||| |||||| || | ||||||
Sbjct 3972 CTCGGCGCAATTGCAGCTGGTCAATGAG--GGCAAAATGCATGGATTTCTGAGAATGTAT 4029
Query 135539 TGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATA 135598
||||| || |||||| | |||||| | | | | || | ||||||| | | |||
Sbjct 4030 TGGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGCTGGAGTATAGCATA 4089
Query 135599 TTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATG 135658
|| | || || | |||||| | ||||| |||||| | || || || || || || |||
Sbjct 4090 TTGCTGAACGACAAATACAGTCTGGATGGCCGCGATCCCAACGGTTATGTGGGCTGCATG 4149
Query 135659 TGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATT 135718
|||||| | | ||| | || ||| | | |||||||||||| | || |||||||||
Sbjct 4150 TGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCTATATTCGGCAAGATT 4209
Query 135719 CGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763
||||||||||||||| | || |||| | |||||||| |||| |||
Sbjct 4210 CGCTATATGAACTATCAGGGATGTAAACGAAAATTTGATGTTAAT 4254
>SEQ10860
Length=7223
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| || || || ||| | || |||||||| || ||||||||
Sbjct 1680 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 1621
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | |||||| || ||||| ||||||||||| || || || ||||||
Sbjct 1620 GATACCATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 1561
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | |||||||| ||||||||||| | || |||||||||||||
Sbjct 1560 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 1501
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| ||||| ||||| || || || ||||| | || | || |||||
Sbjct 1500 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 1454
>seq4710
Length=78879
Score = 125 bits (138), Expect = 6e-24
Identities = 167/231 (72%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || ||||| || ||| | || || || || ||||| || ||
Sbjct 8830 ATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCATCT 8771
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || || || |||||||| ||||| || || || |||||
Sbjct 8770 GATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 8711
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || |||| || || || | || || ||||||
Sbjct 8710 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTACAAC 8651
Query 27168 ATTCAAAAGGAGTCGA-CCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||| |||| || ||||| ||||| |||| ||||| ||
Sbjct 8650 ATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 8600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434667751089600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |