Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028677.1 Length=46596 Score E Sequences producing significant alignments: (Bits) Value seq963 87.8 5e-13 >seq963 Length=26998 Score = 87.8 bits (96), Expect = 5e-13 Identities = 208/309 (67%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 1886 TCGCAGCCCCGGACGGTACTCCGTTCTACGCCTGCCAGGCCGGTACGGTTCAGTTCATCG 1945 |||| ||| | ||||| || || |||||||||||| | || || || | | ||||| Sbjct 21955 TCGCCGCCGCCGACGGCACCCCCTTCTACGCCTGCGCCGGGGGCACAGTCCTCTACATCG 22014 Query 1946 GCTCTGCAACTGGTTACGGCCAGTGGCTGGTTATCGACTCGTCCGATGAC---GAAGGCA 2002 || | || | || ||||| |||||| | || ||||| | ||| ||| || ||| Sbjct 22015 GCCCCGCCAGCGGCTACGGTCAGTGGATTGTCCTCGAC-CACCCG--GACAGTGAGGGCG 22071 Query 2003 GCGGCTGTG-TTGAGTACGGCCACATGTGGAACGCCCGAGCTACCGGCCTTTCGGTCGGT 2061 ||||| ||| ||||||||||| |||||| ||||| || || ||||| | || Sbjct 22072 GCGGC-GTGACCGAGTACGGCCATATGTGGGACGCCTACGCGACTGGCCTGCAGCAGGGG 22130 Query 2062 GACCACGTCGAGGCCGGCCAACTGATCGGTTATATCGGCAGCAACGGACAGTCCACTGGA 2121 | || || || || || || ||||| || |||| || || ||| | || || Sbjct 22131 CAGTGGGTTGATGCAGGACAGCTCATCGGCTACGTCGGGTCGAATGGTCAGGCGACCGGC 22190 Query 2122 CCCCACCTGCACATCACGGTCTGGGAACGCGGATACAACAGTGTCCGTATCGACCCAGAG 2181 || ||||| ||| |||| || ||||| || | ||| | | || |||||||| ||| Sbjct 22191 CCGCACCTTCACCTCACAGTGTGGGAGCGAGCCTACGGCGGCCAGCGCATCGACCCGGAG 22250 Query 2182 GTCTGGCTG 2190 |||||| Sbjct 22251 ACGTGGCTG 22259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148904030849580