Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028682.1 Length=69030 Score E Sequences producing significant alignments: (Bits) Value seq963 149 3e-31 seq2825 136 2e-27 >seq963 Length=26998 Score = 149 bits (164), Expect = 3e-31 Identities = 186/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 40627 CGATTTCGCCGCCAAGGACGGCACACCGATCTACGC-TGCGCAGGGCGGCACCGTGGCCT 40685 ||| ||||||||| |||||||| || ||||||| ||||| ||| ||||| || || Sbjct 21950 CGACTTCGCCGCCGCCGACGGCACCCCCTTCTACGCCTGCGCCGGG-GGCACAGTCCTCT 22008 Query 40686 ACATCGGCAGAGCCGACGGTTTCGGGCAATGGATCGTGATCGACCACCNNNNNNNNNNNN 40745 |||||||| ||| ||| | ||| || ||||| || ||||||||| Sbjct 22009 ACATCGGCCCCGCCAGCGGCTACGGTCAGTGGATTGTCCTCGACCACCCGGACAGTGAGG 22068 Query 40746 NTGGCGGCACGACCGTCTACGGACACATGTGGGACGCGTTCGCCACCGGACTACGTCAAG 40805 |||||| ||||| ||||| || ||||||||||| | ||| || || || | || | Sbjct 22069 GCGGCGGCGTGACCGAGTACGGCCATATGTGGGACGCCTACGCGACTGGCCTGCAGCAGG 22128 Query 40806 GGCAGCGCGTCGAGGCCGGGCAGCTCATCGCCTACGTCGGCACGAACGGTCAATCGACCG 40865 ||||| | || || || || |||||||||| ||||||||| |||| ||||| |||||| Sbjct 22129 GGCAGTGGGTTGATGCAGGACAGCTCATCGGCTACGTCGGGTCGAATGGTCAGGCGACCG 22188 Query 40866 GCCCACATCTGCACTTC 40882 |||| || || ||| || Sbjct 22189 GCCCGCACCTTCACCTC 22205 >seq2825 Length=19190 Score = 136 bits (150), Expect = 2e-27 Identities = 284/418 (68%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 46131 GGTGGGCCGGGCCAGCACGACGCAGTCACACATCGGGAAATCGGCACCCTCGGTGAGCAC 46190 ||| || || ||||||||||| |||||||| ||||| || || |||||||||||||| Sbjct 6612 GGTAGGACGTGCCAGCACGACACAGTCACAGCGGGGGAAGTCCGCGCCCTCGGTGAGCAC 6553 Query 46191 CTGCACAGTGACCAGCGCCTTGGCGGTGCCGTTTCGGTACGCCTCGTATACGGGCTGGCG 46250 |||||||||||||| ||| | |||| | ||| || ||| | ||| || Sbjct 6552 CTGCACAGTGACCATGGCCCGGATTTCGCCGCTGCGGAACTGGCGGTAGATTTCCTGCCG 6493 Query 46251 CTCGGCGTAGCTCATCGAGCCGGTGACGGCGACGGCG-GGGAAATCGGCG-GCGGTCAGT 46308 ||| || | ||| ||||| || |||| | | ||| | | ||| ||||| || Sbjct 6492 CTCCGCCTTGCTGTGGCTGCCGGACAC--CGACCGGGTGGGGTAGCCGCGCGCGGTGAGC 6435 Query 46309 GCGTCGGCGATGTGGTGGGCNNCGTCGACCGACGCGGCGAAGATGATCGGGCGGCGGTCG 46368 || |||| | | | | | ||||| ||| ||||||||||||||||| ||||||| Sbjct 6434 TCGGCGGCCAGCTCCTCGCCCTGCTCGACGGACACGGCGAAGATGATCGGGACGCGGTCG 6375 Query 46369 GCGGCGTGCAGCTTGATCGCGTCGACCACGTACTCGG--TGGCGGCTTCCATGACCTCGG 46426 |||||||| | | |||||||| || |||| | | ||| |||||||||| Sbjct 6374 GCGGCGTGGCGGAGCACGGCGTCGAC--GGTGGTCGGGATCGAGGCACGCATGACCTCGT 6317 Query 46427 CGAGGTCGGACTGCTGGAAATCACCGGCGACGGTGCGCACGTCATCGAGGGCGTTGAGGT 46486 | ||||||||||| | | | || ||| |||| || | ||||| ||| |||| Sbjct 6316 CCAGGTCGGACTGTTTGTAGTCTCCGCCGACCGTCTTGATCCGGGCGAGGAGGTTCAGGT 6257 Query 46487 TATTGATGCGGACGGTCAGACCGCGCGGGCGCACGAGGTAGCCAGAGTCGATGGCCCA 46544 | | || |||||||| ||||| || | |||||| | || |||||| ||||| Sbjct 6256 GCTCGGTGACCACGGTCAGCCCGCGGGGCGGGACGAGGAACCCGTTGTCGATCGCCCA 6199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 220647147627855