Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value SEQ39896 111 4e-20 >SEQ39896 Length=444 Score = 111 bits (122), Expect = 4e-20 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 39549 CGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCA 39608 || |||||||||||| | |||||||| | ||||||||| ||||| |||||||||||||| Sbjct 192 CGTCGGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATCGGGCTGTTATCCCA 133 Query 39609 GCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAA 39668 ||||||||| |||||||| | || || | || | ||| ||| | | | || | | Sbjct 132 GCAGTTTCCCCGCCGACTGACGCTTTGGTTTATTCTGTAACTCAAGATAAGTTGTTGATA 73 Query 39669 CTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG-GGCTTAC 39727 | || ||||| || || || || ||||| |||||||| || | ||| || | || Sbjct 72 TTTTAGGCCTGTATACTGGCTTCCCTGGTCGCTATGGAACATGACATC-ACGCGGTTGAC 14 Query 39728 CACGGGTTTC 39737 |||| ||||| Sbjct 13 CACGCGTTTC 4 Score = 111 bits (122), Expect = 4e-20 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 16924 CGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCA 16983 || |||||||||||| | |||||||| | ||||||||| ||||| |||||||||||||| Sbjct 192 CGTCGGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATCGGGCTGTTATCCCA 133 Query 16984 GCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAA 17043 ||||||||| |||||||| | || || | || | ||| ||| | | | || | | Sbjct 132 GCAGTTTCCCCGCCGACTGACGCTTTGGTTTATTCTGTAACTCAAGATAAGTTGTTGATA 73 Query 17044 CTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG-GGCTTAC 17102 | || ||||| || || || || ||||| |||||||| || | ||| || | || Sbjct 72 TTTTAGGCCTGTATACTGGCTTCCCTGGTCGCTATGGAACATGACATC-ACGCGGTTGAC 14 Query 17103 CACGGGTTTC 17112 |||| ||||| Sbjct 13 CACGCGTTTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132087642813000