Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028742.1 Length=70270 Score E Sequences producing significant alignments: (Bits) Value seq2825 125 3e-24 SEQ24884 82.4 3e-11 >seq2825 Length=19190 Score = 125 bits (138), Expect = 3e-24 Identities = 411/628 (65%), Gaps = 28/628 (4%) Strand=Plus/Minus Query 47973 CCGTCCTCATCGACGGCCTTGGTCTCCGCGCCGGGGAGCAGCTGCGTCAGGTTGACCAGC 48032 || || || |||| ||| |||||| || ||| | ||||| |||||| || | || Sbjct 6797 CCCTCGTCGTCGAACTCCTGGGTCTCGGCCTCGGCGTAGAGCTGGGTCAGGGTGGCGAGT 6738 Query 48033 TTCATCGTCCGCGCCG-ATCC-GGCGAGGTCGAGCACCAGAGCGTCCGACTTG------- 48083 ||| | ||| ||| | |||| || |||||||| ||||| ||||| | |||| Sbjct 6737 TTCTT-GTC-GCGGAGCATCCCGGTGAGGTCGATGACCAGTGCGTCGGTCTTGTCCTGTC 6680 Query 48084 ------CCGGG-----GTACAGGCGGAGCGCGCGACCGACCATCTGCGAATACAGGTTGC 48132 ||||| ||| || |||| | || ||||| || |||| | || | Sbjct 6679 CGGTGTCCGGGTCGGTGTAGAGACGGACGCCACGTCCGACAATTTGCGCGAAAAGTACGT 6620 Query 48133 GCGAGCGGGTCGGGCGGGCGAGCACCACGGTGTCGCACATCGGGAAGTCAGCGCCCTCGG 48192 || | ||| || || || ||||| || ||| || |||||||| |||||||||| Sbjct 6619 CTGACCTGGTAGGACGTGCCAGCACGACACAGTCACAGCGGGGGAAGTCCGCGCCCTCGG 6560 Query 48193 TCAACACCTGCACGGTCACCAGCGCCCGGCACTCGCCGGACCGGAACGCTTCGTACATCG 48252 | | ||||||||| || |||| |||||| |||||| |||||| ||| || Sbjct 6559 TGAGCACCTGCACAGTGACCATGGCCCGGATTTCGCCGCTGCGGAACTGGCGGTAGATTT 6500 Query 48253 GCTGCCGGTCGGCGTAGTTGATCGC-GCCGGTCACCGCGACGGCGGGATAATCCTCG-GC 48310 |||||| || || | | || | || ||||| ||||| || ||| | | || || || Sbjct 6499 CCTGCCGCTCCGCCTTGCTG-TGGCTGCCGGACACCGACCGGGTGGGGT-AGCCGCGCGC 6442 Query 48311 AGTCAGCGCCTCGGCGATGTGGT-GAGCGGCGTCGACCGAGGCGGCGAAGATGATCGGGG 48369 || ||| | |||| | | | | | || ||||| || ||||||||||||||||| Sbjct 6441 GGTGAGCTCGGCGGCCAGCTCCTCGCCCTGC-TCGACGGACACGGCGAAGATGATCGGGA 6383 Query 48370 TGCGATCGGCGGCGTGCAGCTTGATCGCGTCGACCACGTACTGCGTCGCCGCCTCCATGA 48429 ||| ||||||||||| | | |||||||| | | | ||| || ||||| Sbjct 6382 CGCGGTCGGCGGCGTGGCGGAGCACGGCGTCGACGGTGGTCGGGATCGAGGCACGCATGA 6323 Query 48430 CCTCGGCGAGATCGCCCTGGTGGAAGTCTCCGGCGACCGTCCGCACGTCATCGAGCGCGT 48489 ||||| | || ||| ||| | | |||||||| |||||||| | |||| || Sbjct 6322 CCTCGTCCAGGTCGGACTGTTTGTAGTCTCCGCCGACCGTCTTGATCCGGGCGAGGAGGT 6263 Query 48490 CGAGACCCTTGATCTTCACGGTCAGCCCGCGCGGCTTGACCAGGTACTTTTTGCGGATGG 48549 || || | | ||||||||||||||| ||| ||| ||| || ||| ||| | Sbjct 6262 TCAGGTGCTCGGTGACCACGGTCAGCCCGCGGGGCGGGACGAGGAACCCGTTGTCGATCG 6203 Query 48550 CCCACGCGATGTCCTTCTCGTAGGCGAT 48577 ||||| | ||| |||| ||||||| Sbjct 6202 CCCACTTCAGGTCGCGCTCGAAGGCGAT 6175 >SEQ24884 Length=1939 Score = 82.4 bits (90), Expect = 3e-11 Identities = 118/165 (72%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 40953 ATCCGCCAGGACACCGGCTACTGGTGCGGTCCGGCCTCGACTCAGATGGCCCT----GTC 41008 ||| | ||||||||| |||||||||||||||||| | || |||| | | | | Sbjct 945 ATCGGGCAGGACACCTACTACTGGTGCGGTCCGGCGACCACGCAGACGCTGATTCAGGCC 886 Query 41009 CGCACGCGGCAAGTACGTCGATGAGGCGACGCTCGCTCGCGAGTGCAAGACGACCGTCAA 41068 || || |||| | ||||| |||||||||||||| | ||| | |||||||| | Sbjct 885 CGTACCGGGCAGATG-GTCGACGAGGCGACGCTCGCCAGTGAGCTCGGCACGACCGTGGA 827 Query 41069 CGGAACCGACAACGTCGGCCAGATCGAGCGGGTGCTCGACGTCCG 41113 || |||| ||| ||||| ||| ||| ||||| ||| ||| ||| Sbjct 826 GGGGACCGCCAATGTCGGTCAGCTCGCCCGGGTACTCAACGACCG 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224612917990055