Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028757.1 Length=50768 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 84.2 7e-12 SEQ24884 82.4 2e-11 >SEQ25496 Length=2929 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 3855 CGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAGTCCTG 3914 ||| |||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||| Sbjct 403 CGTGGCTCAATTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 461 Query 3915 CCGTGTCTGCAACCACCC 3932 || |||||| ||||| Sbjct 462 TCGCCCCTGCAA-CACCC 478 >SEQ24884 Length=1939 Score = 82.4 bits (90), Expect = 2e-11 Identities = 209/306 (68%), Gaps = 24/306 (8%) Strand=Plus/Minus Query 4570 AACGACCCGCCC-ACGCAGGCCCAGAAGGACCGGCTGTGGGAGCACATCGTCCGCTCCAT 4628 |||||||||||| ||| | | | |||| || | | ||||| || ||||||| ||||| Sbjct 747 AACGACCCGCCCCACG-ACGACGAGAAAGAGCAGTTGTGGTCGCGCATCGTCGCGTCCAT 689 Query 4629 CAACGCGGGCTACGGCGTCGTCATGAAC---TGGGTCGCCCCGCCGTCGAACAAGCCACG 4685 ||||| ||| || || | |||| |||||| |||||| ||| | || || Sbjct 688 CAACGGCGGCGTAGGGGTGGCGGCGAACATCTGGGTC---CCGCCGGAAAACTACCCGCG 632 Query 4686 CGGTGTGA-AGGGCTC---GGTCAGCCCGCGCTACAGCGGCGG---CACCACGTACCACT 4738 || || | ||| || | || || |||| |||| || | || | |||| Sbjct 631 -GGCGTCCTACACCTCCACGGAGAACCTGCACTACGGCGGTGGATTCGTCATG---CACT 576 Query 4739 ACGTCGCGTGCATGGGCTACGAC---GACACCCCCGGCGCTCGGGCA-GTGTGGATCGCC 4794 || ||||| |||||| |||| | |||||| ||| | || | || || ||| | ||| Sbjct 575 ACCTCGCGGTCATGGGGTACGCCCGCGACACCGGCGGTG-TCCGCCACGTCTGGCTGGCC 517 Query 4795 GACAGCGGCTTCCAGCCGCAGGGCTACTGGATCTCGTTTGACCAGTGCGCCACGCTGATC 4854 |||||||| ||| | ||||| |||| ||| | |||| ||||||| |||||| ||||| Sbjct 516 GACAGCGGGTTCGACCCGCACGGCTCGTGGGTGACGTTCGACCAGTTCGCCACCATGATC 457 Query 4855 CCGCCG 4860 || ||| Sbjct 456 CCCCCG 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162247121547300