Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value SEQ28400 181 4e-41 >SEQ28400 Length=5104 Score = 181 bits (200), Expect = 4e-41 Identities = 304/433 (70%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 5832 CGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCC-TGC 5890 |||| || ||| || || || || || ||||||| |||||| || ||| |||| ||| Sbjct 1323 CGTCGGCATCGGACCGGCCGGCACCGGCAAGACCTACCTGGCTGTCG-CCAAGGCCGTGC 1265 Query 5891 GCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAG 5950 ||| || | || || ||| || || |||||||||||||||| ||||| | Sbjct 1264 AGGCGCTCCAGAAGCAGCAGGTCACCCGCATCATCCTCACCCGGCCCGCCGTCGAGGCGG 1205 Query 5951 ATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCC 6010 |||||||||||||||||||||||||| | | |||||||| | ||||||||| | Sbjct 1204 GGGAGAAGCTCGGCTTCCTGCCCGGCACACTCGGTGAGAAGATCGGCCCCTACCTCCGGC 1145 Query 6011 CGATGCTGGACGCGGTGATCGACCTGGTCGGCCCGACGATGACG--AAGCGCCTCCTCGA 6068 || || |||||| || ||| || ||| ||||||| |||| || ||| |||| Sbjct 1144 CGTTGTACGACGCGCTGGGGGACATGCTCGACCCGACG--GACGTCCCCCGGCTCATCGA 1087 Query 6069 GTC--GCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGAC 6126 ||| | | || | ||| |||| |||||||| |||||||| || || || |||||| Sbjct 1086 GTCCGGGGTCA--TCGAGATCGCGCCGCTGGCGTACATGCGCGGACGCACCCTCAACGGG 1029 Query 6127 ACGTACATCGTCGCTGACGAGATGCAGAACGCCACCCCGCGCCAGACCGCGCTGCTGGTG 6186 | | | || || |||||| ||||||| |||||||| |||| | || | | Sbjct 1028 GCCTTCGTCATCCTCGACGAGGCGCAGAACACCACCCCGGCGCAGATGAAGATGTTCCTC 969 Query 6187 ACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTG 6246 ||||| || || ||||| |||||| |||| | | ||| |||| | ||||| || |||| Sbjct 968 ACCCGGCTCGGTTTCGGCACGAAGATCGTCGTCACCGGCGACCTGTCCCAGGTCGCCCTG 909 Query 6247 CCGCCCGGCAAGG 6259 || | | || ||| Sbjct 908 CCCCGCAGCCAGG 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191383160918400