Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028770.1
Length=59878
Score E
Sequences producing significant alignments: (Bits) Value
SEQ28400 181 4e-41
>SEQ28400
Length=5104
Score = 181 bits (200), Expect = 4e-41
Identities = 304/433 (70%), Gaps = 10/433 (2%)
Strand=Plus/Minus
Query 5832 CGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCC-TGC 5890
|||| || ||| || || || || || ||||||| |||||| || ||| |||| |||
Sbjct 1323 CGTCGGCATCGGACCGGCCGGCACCGGCAAGACCTACCTGGCTGTCG-CCAAGGCCGTGC 1265
Query 5891 GCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAG 5950
||| || | || || ||| || || |||||||||||||||| ||||| |
Sbjct 1264 AGGCGCTCCAGAAGCAGCAGGTCACCCGCATCATCCTCACCCGGCCCGCCGTCGAGGCGG 1205
Query 5951 ATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCC 6010
|||||||||||||||||||||||||| | | |||||||| | ||||||||| |
Sbjct 1204 GGGAGAAGCTCGGCTTCCTGCCCGGCACACTCGGTGAGAAGATCGGCCCCTACCTCCGGC 1145
Query 6011 CGATGCTGGACGCGGTGATCGACCTGGTCGGCCCGACGATGACG--AAGCGCCTCCTCGA 6068
|| || |||||| || ||| || ||| ||||||| |||| || ||| ||||
Sbjct 1144 CGTTGTACGACGCGCTGGGGGACATGCTCGACCCGACG--GACGTCCCCCGGCTCATCGA 1087
Query 6069 GTC--GCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGAC 6126
||| | | || | ||| |||| |||||||| |||||||| || || || ||||||
Sbjct 1086 GTCCGGGGTCA--TCGAGATCGCGCCGCTGGCGTACATGCGCGGACGCACCCTCAACGGG 1029
Query 6127 ACGTACATCGTCGCTGACGAGATGCAGAACGCCACCCCGCGCCAGACCGCGCTGCTGGTG 6186
| | | || || |||||| ||||||| |||||||| |||| | || | |
Sbjct 1028 GCCTTCGTCATCCTCGACGAGGCGCAGAACACCACCCCGGCGCAGATGAAGATGTTCCTC 969
Query 6187 ACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTG 6246
||||| || || ||||| |||||| |||| | | ||| |||| | ||||| || ||||
Sbjct 968 ACCCGGCTCGGTTTCGGCACGAAGATCGTCGTCACCGGCGACCTGTCCCAGGTCGCCCTG 909
Query 6247 CCGCCCGGCAAGG 6259
|| | | || |||
Sbjct 908 CCCCGCAGCCAGG 896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191383160918400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |