Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028784.1 Length=51409 Score E Sequences producing significant alignments: (Bits) Value SEQ24884 87.8 6e-13 SEQ25496 80.6 9e-11 >SEQ24884 Length=1939 Score = 87.8 bits (96), Expect = 6e-13 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 5725 CCTGGTACTGGACGGTCGCCCGCCCGGACATCAACGAGCTGTCCGATCGCCG-CGACCTG 5783 |||||||||||||||||||||||||| || |||||| || || |||| || | || | Sbjct 1160 CCTGGTACTGGACGGTCGCCCGCCCGAACCTCAACGCGCAGTGCGAT-GCGGATGATGTC 1102 Query 5784 AACACGGTCACCCGCCGGATCAACGGCGGCACCAACGGCCTCGCGGATCG 5833 | |||||||| |||||||||||| ||||||||||| ||||| || Sbjct 1101 GTGGCCGTCACCCGGTCGATCAACGGCGGAACCAACGGCCTGGCGGACCG 1052 >SEQ25496 Length=2929 Score = 80.6 bits (88), Expect = 9e-11 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 2438 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2493 |||||||| || ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 407 GCTCAATT-GGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164297198521710