Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028785.1
Length=72790
Score E
Sequences producing significant alignments: (Bits) Value
SEQ13951 450 6e-122
SEQ22413 152 2e-32
SEQ32968 149 3e-31
SEQ43844 100 1e-16
>SEQ13951
Length=2429
Score = 450 bits (498), Expect = 6e-122
Identities = 593/817 (73%), Gaps = 9/817 (1%)
Strand=Plus/Minus
Query 64075 TATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 64134
|||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || ||
Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909
Query 64135 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCA 64194
|||||| || || || || || ||| | || || || ||||| || ||| | |||||
Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849
Query 64195 GAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 64254
||||| ||| |||| |||||||| ||||||||| |||||| |||| ||||| ||||||||
Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789
Query 64255 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCA 64314
||| ||||| |||||| ||||||||| | || ||||||||||| ||||||||
Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729
Query 64315 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 64374
||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || ||
Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669
Query 64375 CTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 64434
||| || ||||| ||| ||| || ||| |||| || || || || |||||||||||
Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609
Query 64435 CGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATC-TCCA 64493
||| ||||| || ||||||||| ||||| |||||||| | ||||| | || |||
Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549
Query 64494 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 64553
| ||| ||| | ||| |||||||| | |||||||||||||| |||| |
Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493
Query 64554 ACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCA 64613
||| || |||||||| |||||||||||||| ||| ||||||||| || ||||||
Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433
Query 64614 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 64673
|| |||| || || || ||||| || | || || ||||| ||||| |||
Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373
Query 64674 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCG 64733
| ||||| |||||||||||||| | | |||||| | | |||||| ||| |||
Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313
Query 64734 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 64791
| ||||| |||||||||| || || |||||| || ||||||||| |||| | ||
Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255
Query 64792 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAA 64851
||| | |||||||| ||| |||||| || ||| || | | | | | ||||||||
Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195
Query 64852 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 64888
| |||||| | ||| ||||||| |||||||||
Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158
>SEQ22413
Length=7522
Score = 152 bits (168), Expect = 2e-32
Identities = 221/311 (71%), Gaps = 11/311 (4%)
Strand=Plus/Minus
Query 58329 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 58388
||||||||| ||| || ||||||||| |||| | ||||| | || || |||
Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615
Query 58389 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 58445
|||||||| || | |||| || ||| |||| | ||| |||| |||||||
Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555
Query 58446 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGG 58505
||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| ||
Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495
Query 58506 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 58561
| ||||| || || ||| | || || ||||| | || | | |||| || |||
Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439
Query 58562 TTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 58621
| ||||||| ||||| || ||||||||||| ||||||||||| |||||| |||||
Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379
Query 58622 CCGTCGCTGCG 58632
|| ||||||||
Sbjct 3378 CCCTCGCTGCG 3368
>SEQ32968
Length=2597
Score = 149 bits (164), Expect = 3e-31
Identities = 236/335 (70%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 58329 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 58388
||||||||| ||| || ||| || || ||| ||| | |||| ||| ||||
Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113
Query 58389 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 58442
| |||||| ||||| ||| |||| | ||| || |||| | || ||| ||||
Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056
Query 58443 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGG 58502
||||||| || || |||||| |||||| | |||||||| | |||||||||||||| |
Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996
Query 58503 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 58562
|| | ||| || || || | ||||| ||||| ||| || ||||| ||||
Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936
Query 58563 TCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 58622
||| ||| ||||| || ||||||||||| ||||||||||||| |||||| ||||||
Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876
Query 58623 CGTCGCTGCGGTGGGCAACAGCTCGTGTGTCCAAG 58657
|||| || |||| || || || | || |||||
Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841
>SEQ43844
Length=619
Score = 100 bits (110), Expect = 1e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 58460 TTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAA 58519
|||||| || || | | |||||| | || || |||||||||||| | ||||| || ||
Sbjct 151 TTCCTCACCTTCAACCTGTGGCGCCAGGCAGCGGAGAACGTGGCGAACAGCCTGCACAAG 210
Query 58520 GGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGC 58579
|| | || || ||||| ||| | ||| ||||| |||| |||| | ||| |||
Sbjct 211 GGTGACCGGGTGATCGTCGTCGGCAATCTCCGCCAGCGGTCCTACGAGTCGAAGACCGGC 270
Query 58580 GACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCGGT 58634
|||| ||||||||| |||| | |||| |||||| ||||||| || || ||||
Sbjct 271 GACACGCGCACCGTGTACGAGATCGAGGCGGACGAGGTCGGCCCTTCCCTCCGGT 325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 232672386790655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |