Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value SEQ13951 450 6e-122 SEQ22413 152 2e-32 SEQ32968 149 3e-31 SEQ43844 100 1e-16 >SEQ13951 Length=2429 Score = 450 bits (498), Expect = 6e-122 Identities = 593/817 (73%), Gaps = 9/817 (1%) Strand=Plus/Minus Query 64075 TATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 64134 |||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || || Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909 Query 64135 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCA 64194 |||||| || || || || || ||| | || || || ||||| || ||| | ||||| Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849 Query 64195 GAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 64254 ||||| ||| |||| |||||||| ||||||||| |||||| |||| ||||| |||||||| Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789 Query 64255 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCA 64314 ||| ||||| |||||| ||||||||| | || ||||||||||| |||||||| Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729 Query 64315 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 64374 ||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || || Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669 Query 64375 CTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 64434 ||| || ||||| ||| ||| || ||| |||| || || || || ||||||||||| Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609 Query 64435 CGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATC-TCCA 64493 ||| ||||| || ||||||||| ||||| |||||||| | ||||| | || ||| Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549 Query 64494 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 64553 | ||| ||| | ||| |||||||| | |||||||||||||| |||| | Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493 Query 64554 ACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCA 64613 ||| || |||||||| |||||||||||||| ||| ||||||||| || |||||| Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433 Query 64614 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 64673 || |||| || || || ||||| || | || || ||||| ||||| ||| Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373 Query 64674 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCG 64733 | ||||| |||||||||||||| | | |||||| | | |||||| ||| ||| Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313 Query 64734 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 64791 | ||||| |||||||||| || || |||||| || ||||||||| |||| | || Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255 Query 64792 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAA 64851 ||| | |||||||| ||| |||||| || ||| || | | | | | |||||||| Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195 Query 64852 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 64888 | |||||| | ||| ||||||| ||||||||| Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158 >SEQ22413 Length=7522 Score = 152 bits (168), Expect = 2e-32 Identities = 221/311 (71%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 58329 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 58388 ||||||||| ||| || ||||||||| |||| | ||||| | || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 58389 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 58445 |||||||| || | |||| || ||| |||| | ||| |||| ||||||| Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 58446 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGG 58505 ||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| || Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 58506 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 58561 | ||||| || || ||| | || || ||||| | || | | |||| || ||| Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439 Query 58562 TTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 58621 | ||||||| ||||| || ||||||||||| ||||||||||| |||||| ||||| Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379 Query 58622 CCGTCGCTGCG 58632 || |||||||| Sbjct 3378 CCCTCGCTGCG 3368 >SEQ32968 Length=2597 Score = 149 bits (164), Expect = 3e-31 Identities = 236/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 58329 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 58388 ||||||||| ||| || ||| || || ||| ||| | |||| ||| |||| Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113 Query 58389 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 58442 | |||||| ||||| ||| |||| | ||| || |||| | || ||| |||| Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056 Query 58443 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGG 58502 ||||||| || || |||||| |||||| | |||||||| | |||||||||||||| | Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996 Query 58503 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 58562 || | ||| || || || | ||||| ||||| ||| || ||||| |||| Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936 Query 58563 TCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 58622 ||| ||| ||||| || ||||||||||| ||||||||||||| |||||| |||||| Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876 Query 58623 CGTCGCTGCGGTGGGCAACAGCTCGTGTGTCCAAG 58657 |||| || |||| || || || | || ||||| Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 >SEQ43844 Length=619 Score = 100 bits (110), Expect = 1e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 58460 TTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAA 58519 |||||| || || | | |||||| | || || |||||||||||| | ||||| || || Sbjct 151 TTCCTCACCTTCAACCTGTGGCGCCAGGCAGCGGAGAACGTGGCGAACAGCCTGCACAAG 210 Query 58520 GGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGC 58579 || | || || ||||| ||| | ||| ||||| |||| |||| | ||| ||| Sbjct 211 GGTGACCGGGTGATCGTCGTCGGCAATCTCCGCCAGCGGTCCTACGAGTCGAAGACCGGC 270 Query 58580 GACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCGGT 58634 |||| ||||||||| |||| | |||| |||||| ||||||| || || |||| Sbjct 271 GACACGCGCACCGTGTACGAGATCGAGGCGGACGAGGTCGGCCCTTCCCTCCGGT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232672386790655