Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_028796.1
Length=49203
Score E
Sequences producing significant alignments: (Bits) Value
SEQ30131 235 2e-57
seq6253 179 1e-40
SEQ27525 91.5 5e-14
SEQ29893 82.4 2e-11
>SEQ30131
Length=2206
Score = 235 bits (260), Expect = 2e-57
Identities = 289/395 (73%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 43922 GGACTGATGCGCATCAGGTCAACCAAACCCGAGTTCTGGCGCTCGGCGCGGATCGCGTCG 43981
|||| | || | ||||| || || || || ||||||||| | ||| | ||| ||| |
Sbjct 1681 GGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCT 1740
Query 43982 GTTTCGTGGGACGCGCGGCTGGTGCTGAAGGGCCTCGAGTCGTACGTCGATGACAACGGC 44041
|| ||||| ||||| ||||| || ||||| || ||| || ||||||||||| ||
Sbjct 1741 GTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGT 1800
Query 44042 GTCGGCAAGGACGACATCGCGTTGATCGTCGGCGACGTGTTCCCGCGCGACATGCTCGCG 44101
|| ||| ||| ||||| || |||||||| || |||||| |||||| |||||
Sbjct 1801 GTGGGCCGGGATGACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCATTTCGCG 1860
Query 44102 AACCCTCGCGAGACTTACGCGAGGGTGTCCGAAGCGATTTTCGAGCTCCACCAGGCCGGT 44161
| |||||||||||| |||||||||||||||||| |||| | |||| | ||||||
Sbjct 1861 AGGCCTCGCGAGACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGT 1920
Query 44162 CTGCTGTGGCGCTACGAGGTCGACGGCACCCGACTGCTGTTCGTTTCGTGGTGGGAGGAC 44221
|| || ||| | ||||||| ||| || | | || | | | ||||| ||||| |
Sbjct 1921 CTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGC 1980
Query 44222 GTTCAGCGCATCGACAAACCAGGCAAGGGGCGTTTCCCCAGGCCAGACGGCACGATCAAC 44281
| || || |||||||| ||| ||| || ||||||||||||||||||||||| || |||
Sbjct 1981 CTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAAC 2040
Query 44282 TACCGCGACTCCGAAATTCGCGAGAGTGTCGCGAG 44316
||| || || ||||||||||||||||||||
Sbjct 2041 TACAAGGAATCAACGATTCGCGAGAGTGTCGCGAG 2075
>seq6253
Length=4700
Score = 179 bits (198), Expect = 1e-40
Identities = 372/548 (68%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 38031 CTCACTCTCACTGATCTGTTTTGCGGCGCTGGCGGTTCGAGCACCGGCGCGATCGAGATC 38090
||||| ||| | || | || ||||| || ||||| || |||||| || |||| ||
Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414
Query 38091 CCCGGTGTGGAGGTTCGCGTCGCGTCGAACCACTGGGACCTGGCCGTCGAGACGCACAAC 38150
||||| || || || |||| ||| | | ||||||||| || |||||||| || ||| |
Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354
Query 38151 ACGAACCACCCCGACGCCGACCATGTGTGCGCCGATCTGTCGCAGATCGACCCGCGCCGA 38210
||||||| |||||||| || | |||||||| | ||| ||| ||| ||
Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294
Query 38211 TTCCCGCGCACCGACATCCTCTGGGCGAGCCCGGAGTGCACGAATCACTCGGTGGCCAAG 38270
||||| | ||| ||| || |||| ||| ||||| | ||| ||||||| ||
Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234
Query 38271 GGCCGCAAGCGCGCCGAC-GCGCAGCCCGATCTGT--TCGGCGAGGTCC---TGCCCGAC 38324
||| || |||||| | || ||| | || |||| || || | ||||||
Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCGAC 4174
Query 38325 GCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGACGTGCCCCGGTTCGCCGAGGCGCAC 38384
| ||| ||| || ||||||||||| |||||||||||| || ||| ||||| |||
Sbjct 4173 GACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCAC 4114
Query 38385 CGATACCAGGCCGTCATCGTCGAGAACGTCGTAGACGCGTGGCACTGGCAGCCGTTCCAG 38444
| ||| || ||||| |||||||||||| || | | ||| ||| ||||
Sbjct 4113 CACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCC 4054
Query 38445 GCGTGGCTGATGGCCATGGACTCGCTGGACTACGAGCACCACATCGTGTTCCTGAACTCG 38504
|||||| | ||||| ||||| |||| | |||| |||||| ||| || | || |||
Sbjct 4053 GCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGC 3994
Query 38505 ATGCACGCTCAGGC-GTTCGGGCCAGGGGCACCGCAGTCACGGGACCGCATGTACGTGGT 38563
|||||||| | | | || ||| || | || |||| || || ||||| | ||| ||
Sbjct 3993 ATGCACGC-CGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGT 3935
Query 38564 GTTCTGGC 38571
||||||||
Sbjct 3934 GTTCTGGC 3927
Score = 89.7 bits (98), Expect = 2e-13
Identities = 132/185 (71%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 39069 TTCATCGCGGAGTTGCGCGGCGGCGGGTCCAAGCACCGCCCGGT-TGATCAG---CCGCT 39124
||||||||||| | ||||||||||| || | | |||||| || || || ||
Sbjct 3610 TTCATCGCGGAACTCCGCGGCGGCGGC----AGTAGCACCCGGTCTGCCCACGATCCCCT 3555
Query 39125 GGCAACGGTCACCGCGTCGGGCACGCACCACGGCCTGGTGACGACCTACTACGGCAACGG 39184
| | || ||||| || || || || ||||| |||||||| | | | ||||||||||||||
Sbjct 3554 GTCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAACGG 3495
Query 39185 GGGAGTGGTGCCCACCGGCGAGGCGCTGCCGACGTGCACCACGGTGGAGCGGCACGCGCT 39244
| | | |||| ||| | || ||||||| |||||| |||||| ||| |||||
Sbjct 3494 CACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGCGCT 3435
Query 39245 GCTGA 39249
||||
Sbjct 3434 CCTGA 3430
>SEQ27525
Length=13899
Score = 91.5 bits (100), Expect = 5e-14
Identities = 134/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 3009 GCGATCGAATACCACGACCATCAGATGGCGCTCGTCGCGCTGGCGCATTTCCTGAACCTC 3068
||||||| ||||||||| ||||||| | | ||||||||| |||||||||||
Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747
Query 3069 GACGGCAAGGGCGGCAGCTACGCGCTGGCCAGCGTGCAGGCTGACACGTTCGTGCAGTCG 3128
|| |||||||||||| |||||| ||||| ||| | || |||| | ||||||
Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687
Query 3129 GTGCAGACCGTGGCCGA-TGAGCACCGCGACATCGCCCAGGCGCACATCGTCGAGGACAT 3187
|||||||| | || || || | || |||| |||| ||||||||| || ||| |
Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCG-GACACCGCCACCCAGCACATCGTGGAAGACCT 9628
Query 3188 CGTCGAC 3194
||| |||
Sbjct 9627 CGTTGAC 9621
Score = 86.0 bits (94), Expect = 2e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 48646 TCGTCACCGGCCCGCCGGCCAGCGGCAAGACCACCTACGTCGCACGGCACGCCAAACCCG 48705
|||| | |||||| || ||| || |||| ||||||| || |||| |||||||
Sbjct 13367 TCGTGATCGGCCCTCCCGCCGCAGGGAAGAGCACCTACATCCGGGAGCACCGGAAACCCG 13308
Query 48706 GCGACATCACGATCGACTACGACGCGCTCGCCAACGCGCT 48745
|||||||||| ||||||||||||| |||||||||||| ||
Sbjct 13307 GCGACATCACCATCGACTACGACGTGCTCGCCAACGCCCT 13268
>SEQ29893
Length=4967
Score = 82.4 bits (90), Expect = 2e-11
Identities = 114/156 (73%), Gaps = 8/156 (5%)
Strand=Plus/Minus
Query 13420 GAATCCGGCGGCAACTGGGCCAACGCGGACACCGGCCGAAACGGGCATTACGGCGGTCTG 13479
|| ||| |||||||||||||| | |||||||| ||||| | ||||| ||
Sbjct 1995 GAGTCCACCGGCAACTGGGCCATCA---ACACCGGC---AACGGTTTCAAGGGCGGCCTC 1942
Query 13480 CAGTTCTCCCCGTCGACGTGGAACGCGTTCGGTGGCCAGGAGTTCGCGCCGCT-GCCGCA 13538
|||||| || ||||| ||| || ||||| ||| |||| ||| ||| |||| |
Sbjct 1941 CAGTTCACCGACTCGACCTGGGCCGGCTTCGGCGGCACCGAGTACGCCCCGAGCGCCG-A 1883
Query 13539 CCTGGCGACGCGTGAGCAGCAGATGGCCGTCGCCGA 13574
|| ||| || |||||||||||||| |||||||||||
Sbjct 1882 CCAGGCCACCCGTGAGCAGCAGATCGCCGTCGCCGA 1847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157241863411650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |