Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_028796.1 Length=49203 Score E Sequences producing significant alignments: (Bits) Value SEQ30131 235 2e-57 seq6253 179 1e-40 SEQ27525 91.5 5e-14 SEQ29893 82.4 2e-11 >SEQ30131 Length=2206 Score = 235 bits (260), Expect = 2e-57 Identities = 289/395 (73%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 43922 GGACTGATGCGCATCAGGTCAACCAAACCCGAGTTCTGGCGCTCGGCGCGGATCGCGTCG 43981 |||| | || | ||||| || || || || ||||||||| | ||| | ||| ||| | Sbjct 1681 GGACAGGTGAGGATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCT 1740 Query 43982 GTTTCGTGGGACGCGCGGCTGGTGCTGAAGGGCCTCGAGTCGTACGTCGATGACAACGGC 44041 || ||||| ||||| ||||| || ||||| || ||| || ||||||||||| || Sbjct 1741 GTCGACTGGGATGCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGT 1800 Query 44042 GTCGGCAAGGACGACATCGCGTTGATCGTCGGCGACGTGTTCCCGCGCGACATGCTCGCG 44101 || ||| ||| ||||| || |||||||| || |||||| |||||| ||||| Sbjct 1801 GTGGGCCGGGATGACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCATTTCGCG 1860 Query 44102 AACCCTCGCGAGACTTACGCGAGGGTGTCCGAAGCGATTTTCGAGCTCCACCAGGCCGGT 44161 | |||||||||||| |||||||||||||||||| |||| | |||| | |||||| Sbjct 1861 AGGCCTCGCGAGACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGT 1920 Query 44162 CTGCTGTGGCGCTACGAGGTCGACGGCACCCGACTGCTGTTCGTTTCGTGGTGGGAGGAC 44221 || || ||| | ||||||| ||| || | | || | | | ||||| ||||| | Sbjct 1921 CTCCTATGGAGATACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGC 1980 Query 44222 GTTCAGCGCATCGACAAACCAGGCAAGGGGCGTTTCCCCAGGCCAGACGGCACGATCAAC 44281 | || || |||||||| ||| ||| || ||||||||||||||||||||||| || ||| Sbjct 1981 CTCCAACGAATCGACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAAC 2040 Query 44282 TACCGCGACTCCGAAATTCGCGAGAGTGTCGCGAG 44316 ||| || || |||||||||||||||||||| Sbjct 2041 TACAAGGAATCAACGATTCGCGAGAGTGTCGCGAG 2075 >seq6253 Length=4700 Score = 179 bits (198), Expect = 1e-40 Identities = 372/548 (68%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 38031 CTCACTCTCACTGATCTGTTTTGCGGCGCTGGCGGTTCGAGCACCGGCGCGATCGAGATC 38090 ||||| ||| | || | || ||||| || ||||| || |||||| || |||| || Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414 Query 38091 CCCGGTGTGGAGGTTCGCGTCGCGTCGAACCACTGGGACCTGGCCGTCGAGACGCACAAC 38150 ||||| || || || |||| ||| | | ||||||||| || |||||||| || ||| | Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354 Query 38151 ACGAACCACCCCGACGCCGACCATGTGTGCGCCGATCTGTCGCAGATCGACCCGCGCCGA 38210 ||||||| |||||||| || | |||||||| | ||| ||| ||| || Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294 Query 38211 TTCCCGCGCACCGACATCCTCTGGGCGAGCCCGGAGTGCACGAATCACTCGGTGGCCAAG 38270 ||||| | ||| ||| || |||| ||| ||||| | ||| ||||||| || Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234 Query 38271 GGCCGCAAGCGCGCCGAC-GCGCAGCCCGATCTGT--TCGGCGAGGTCC---TGCCCGAC 38324 ||| || |||||| | || ||| | || |||| || || | |||||| Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCGAC 4174 Query 38325 GCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGACGTGCCCCGGTTCGCCGAGGCGCAC 38384 | ||| ||| || ||||||||||| |||||||||||| || ||| ||||| ||| Sbjct 4173 GACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCAC 4114 Query 38385 CGATACCAGGCCGTCATCGTCGAGAACGTCGTAGACGCGTGGCACTGGCAGCCGTTCCAG 38444 | ||| || ||||| |||||||||||| || | | ||| ||| |||| Sbjct 4113 CACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCC 4054 Query 38445 GCGTGGCTGATGGCCATGGACTCGCTGGACTACGAGCACCACATCGTGTTCCTGAACTCG 38504 |||||| | ||||| ||||| |||| | |||| |||||| ||| || | || ||| Sbjct 4053 GCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGC 3994 Query 38505 ATGCACGCTCAGGC-GTTCGGGCCAGGGGCACCGCAGTCACGGGACCGCATGTACGTGGT 38563 |||||||| | | | || ||| || | || |||| || || ||||| | ||| || Sbjct 3993 ATGCACGC-CGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGT 3935 Query 38564 GTTCTGGC 38571 |||||||| Sbjct 3934 GTTCTGGC 3927 Score = 89.7 bits (98), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 39069 TTCATCGCGGAGTTGCGCGGCGGCGGGTCCAAGCACCGCCCGGT-TGATCAG---CCGCT 39124 ||||||||||| | ||||||||||| || | | |||||| || || || || Sbjct 3610 TTCATCGCGGAACTCCGCGGCGGCGGC----AGTAGCACCCGGTCTGCCCACGATCCCCT 3555 Query 39125 GGCAACGGTCACCGCGTCGGGCACGCACCACGGCCTGGTGACGACCTACTACGGCAACGG 39184 | | || ||||| || || || || ||||| |||||||| | | | |||||||||||||| Sbjct 3554 GTCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAACGG 3495 Query 39185 GGGAGTGGTGCCCACCGGCGAGGCGCTGCCGACGTGCACCACGGTGGAGCGGCACGCGCT 39244 | | | |||| ||| | || ||||||| |||||| |||||| ||| ||||| Sbjct 3494 CACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGCGCT 3435 Query 39245 GCTGA 39249 |||| Sbjct 3434 CCTGA 3430 >SEQ27525 Length=13899 Score = 91.5 bits (100), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 3009 GCGATCGAATACCACGACCATCAGATGGCGCTCGTCGCGCTGGCGCATTTCCTGAACCTC 3068 ||||||| ||||||||| ||||||| | | ||||||||| ||||||||||| Sbjct 9806 GCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACCTT 9747 Query 3069 GACGGCAAGGGCGGCAGCTACGCGCTGGCCAGCGTGCAGGCTGACACGTTCGTGCAGTCG 3128 || |||||||||||| |||||| ||||| ||| | || |||| | |||||| Sbjct 9746 GAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGTCG 9687 Query 3129 GTGCAGACCGTGGCCGA-TGAGCACCGCGACATCGCCCAGGCGCACATCGTCGAGGACAT 3187 |||||||| | || || || | || |||| |||| ||||||||| || ||| | Sbjct 9686 CTGCAGACCATCGCGGACTGGATAGCG-GACACCGCCACCCAGCACATCGTGGAAGACCT 9628 Query 3188 CGTCGAC 3194 ||| ||| Sbjct 9627 CGTTGAC 9621 Score = 86.0 bits (94), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 48646 TCGTCACCGGCCCGCCGGCCAGCGGCAAGACCACCTACGTCGCACGGCACGCCAAACCCG 48705 |||| | |||||| || ||| || |||| ||||||| || |||| ||||||| Sbjct 13367 TCGTGATCGGCCCTCCCGCCGCAGGGAAGAGCACCTACATCCGGGAGCACCGGAAACCCG 13308 Query 48706 GCGACATCACGATCGACTACGACGCGCTCGCCAACGCGCT 48745 |||||||||| ||||||||||||| |||||||||||| || Sbjct 13307 GCGACATCACCATCGACTACGACGTGCTCGCCAACGCCCT 13268 >SEQ29893 Length=4967 Score = 82.4 bits (90), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 13420 GAATCCGGCGGCAACTGGGCCAACGCGGACACCGGCCGAAACGGGCATTACGGCGGTCTG 13479 || ||| |||||||||||||| | |||||||| ||||| | ||||| || Sbjct 1995 GAGTCCACCGGCAACTGGGCCATCA---ACACCGGC---AACGGTTTCAAGGGCGGCCTC 1942 Query 13480 CAGTTCTCCCCGTCGACGTGGAACGCGTTCGGTGGCCAGGAGTTCGCGCCGCT-GCCGCA 13538 |||||| || ||||| ||| || ||||| ||| |||| ||| ||| |||| | Sbjct 1941 CAGTTCACCGACTCGACCTGGGCCGGCTTCGGCGGCACCGAGTACGCCCCGAGCGCCG-A 1883 Query 13539 CCTGGCGACGCGTGAGCAGCAGATGGCCGTCGCCGA 13574 || ||| || |||||||||||||| ||||||||||| Sbjct 1882 CCAGGCCACCCGTGAGCAGCAGATCGCCGTCGCCGA 1847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157241863411650